Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1304
         (568 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39739-1|AAA82056.1|  666|Drosophila melanogaster scarlet protei...    29   5.8  
BT011131-1|AAR82798.1|  429|Drosophila melanogaster HL02418p pro...    29   5.8  
BT010208-1|AAQ23526.1|  666|Drosophila melanogaster RH66336p pro...    29   5.8  
AE014296-2748|AAF49455.1|  666|Drosophila melanogaster CG4314-PA...    29   5.8  

>U39739-1|AAA82056.1|  666|Drosophila melanogaster scarlet protein
           protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +2

Query: 266 LTGCTKKF----IRSICVVVFRNTASAC-CFFGTKSLSI 367
           LTG    F    + ++CVV+  N A+AC CFF T   S+
Sbjct: 512 LTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSV 550


>BT011131-1|AAR82798.1|  429|Drosophila melanogaster HL02418p
           protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +2

Query: 266 LTGCTKKF----IRSICVVVFRNTASAC-CFFGTKSLSI 367
           LTG    F    + ++CVV+  N A+AC CFF T   S+
Sbjct: 275 LTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSV 313


>BT010208-1|AAQ23526.1|  666|Drosophila melanogaster RH66336p
           protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +2

Query: 266 LTGCTKKF----IRSICVVVFRNTASAC-CFFGTKSLSI 367
           LTG    F    + ++CVV+  N A+AC CFF T   S+
Sbjct: 512 LTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSV 550


>AE014296-2748|AAF49455.1|  666|Drosophila melanogaster CG4314-PA
           protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +2

Query: 266 LTGCTKKF----IRSICVVVFRNTASAC-CFFGTKSLSI 367
           LTG    F    + ++CVV+  N A+AC CFF T   S+
Sbjct: 512 LTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSV 550


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,839,798
Number of Sequences: 53049
Number of extensions: 433162
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2213979693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)