Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1304
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical...    27   9.4  
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL032650-1|CAE54929.1|  551|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = -2

Query: 348 PKKQQAEAVFLNTTTQIERMNFFVQPVNEQARQVPIAPILS*FRTRTNIKSCFVAXDAKP 169
           P    AE+ F N+ ++I    +F++P NEQ +++        F+T   I+  F +  + P
Sbjct: 777 PAPLPAESFFGNSKSKIA---YFIKPTNEQPQEL--------FQTPVQIEKIFSSTPSSP 825

Query: 168 LSDLAIV 148
           +S+ AI+
Sbjct: 826 VSNAAII 832


>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = -2

Query: 348 PKKQQAEAVFLNTTTQIERMNFFVQPVNEQARQVPIAPILS*FRTRTNIKSCFVAXDAKP 169
           P    AE+ F N+ ++I    +F++P NEQ +++        F+T   I+  F +  + P
Sbjct: 439 PAPLPAESFFGNSKSKIA---YFIKPTNEQPQEL--------FQTPVQIEKIFSSTPSSP 487

Query: 168 LSDLAIV 148
           +S+ AI+
Sbjct: 488 VSNAAII 494


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  MPRLVSCPLPRCYRV 99
           + R+  CPLPRCYR+
Sbjct: 125 LQRICVCPLPRCYRI 139


>AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.2 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 303 QIERMNFFVQPVNEQARQV-PIAPILS*FRTRTNIKSCFVAXDAKPLSDLAIVKRNVTFQ 127
           ++E  N    P N  ARQ  P  P +S    +    SCF    A   SD A +  N TF+
Sbjct: 129 ELENFNSSDVPKNFDARQKWPNCPSISNVPNQGGCGSCFAVAAAGVASDRACIHSNGTFK 188


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 197 LLMLVRVLN*DKIGAMGTCLACSLTGCTKKFIRSICVVVFRNTASACC 340
           L + ++VL+ D    M TC     + C+ +  +S C    +NT S+ C
Sbjct: 150 LKVSIKVLD-DGAKCMSTCSDTCRSSCSNRVSQSTCDATCQNTCSSMC 196


>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
           protein Y6B3A.1a protein.
          Length = 1628

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 293 RSICVVVFRNTASACCFFGTKSLSIRKRALTITKLH*TSSIEMFTRLVCI 442
           R++C+ + RN  S       KSL+I    L   K H  +SIE+F   V +
Sbjct: 333 RTLCMALTRNAVSNNIQVFEKSLAIFVELLDKFKTHLKASIEVFFNSVIL 382


>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
           protein Y6B3A.1a protein.
          Length = 1628

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 293 RSICVVVFRNTASACCFFGTKSLSIRKRALTITKLH*TSSIEMFTRLVCI 442
           R++C+ + RN  S       KSL+I    L   K H  +SIE+F   V +
Sbjct: 333 RTLCMALTRNAVSNNIQVFEKSLAIFVELLDKFKTHLKASIEVFFNSVIL 382


>AL032650-1|CAE54929.1|  551|Caenorhabditis elegans Hypothetical
           protein Y6B3A.1b protein.
          Length = 551

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 293 RSICVVVFRNTASACCFFGTKSLSIRKRALTITKLH*TSSIEMFTRLVCI 442
           R++C+ + RN  S       KSL+I    L   K H  +SIE+F   V +
Sbjct: 333 RTLCMALTRNAVSNNIQVFEKSLAIFVELLDKFKTHLKASIEVFFNSVIL 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,851,108
Number of Sequences: 27780
Number of extensions: 228898
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)