Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1304
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.70 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   0.93 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   0.93 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 270 PVARKSSYVRFAWSCSGIQLLLVVSLAPSLCL 365
           PV R   +  F W   G+ +L  V LA + CL
Sbjct: 551 PVWRFQPWGPFTWGGIGVVVLFAVVLAGATCL 582


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 PGLFVDRLHEKVHTFDLRGRVQEYSFCLLFLWHQVF 360
           PG+  + +  ++ T  +  +V   +FC +F +H +F
Sbjct: 186 PGVVSNPMIAELETLSVEPKVSPMTFCRVFPFHLMF 221


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 PGLFVDRLHEKVHTFDLRGRVQEYSFCLLFLWHQVF 360
           PG+  + +  ++ T  +  +V   +FC +F +H +F
Sbjct: 186 PGVVSNPMIAELETLSVEPKVSPMTFCRVFPFHLMF 221


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 272 RSTNKPGKFPSPRSCPNSELELTL 201
           +S  K  + P+P  CP +  +L L
Sbjct: 849 KSIEKGYRLPAPMDCPEAIYQLML 872


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,908
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)