Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1304
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01780.1 68417.m00233 XH/XS domain-containing protein contain...    28   3.8  
At5g59250.1 68418.m07425 sugar transporter family protein simila...    27   8.7  

>At4g01780.1 68417.m00233 XH/XS domain-containing protein contains
           Pfam profiles PF03469: XH domain, PF03468: XS domain
          Length = 456

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 SSYVRFAWSCSGIQLLLVVSLAPSLCLSGK 374
           SS VRF WS S   L  +V +  SLC+ GK
Sbjct: 20  SSSVRFVWS-SSETLFKIVIITRSLCILGK 48


>At5g59250.1 68418.m07425 sugar transporter family protein similar
           to D-xylose-H+ symporter from Lactobacillus brevis
           GI:2895856, sugar-porter family protein 2 [Arabidopsis
           thaliana] GI:14585701; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 558

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 424 EHFNR*SLV*FCNC*RSFPDRQRLGAKETT 335
           +HF   S   FC+C +S PD   L  KE T
Sbjct: 19  DHFKNPSPRTFCSCFKSRPDSSYLSLKERT 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,925,562
Number of Sequences: 28952
Number of extensions: 202029
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)