Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1303
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.0  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   5.2  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.2  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 653 NRHNNKYSYTSTSDDNLLKNIELFDKLSLRF 745
           + +NN  + T+T DD+ L  +EL + L L F
Sbjct: 539 SNNNNNNNNTNTDDDDKLAYLELHEALKLAF 569


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 653 NRHNNKYSYTSTSDDNLLKNIELFDKLSLRF 745
           + +NN  + T+T DD+ L  +EL + L L F
Sbjct: 539 SNNNNNNNNTNTDDDDKLAYLELHEALKLAF 569


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 222 QNVVKRQSVTIVKLNVGGTLFYTTIGTLTKSDNMLRT 332
           + ++   S  I++ ++     YTTIG LTK DN L T
Sbjct: 321 EKILSILSSNIIQSDLLRGFLYTTIGLLTKVDNHLIT 357


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 467 LFITVG*RYCAVTKIIQNSTEMLPTTINQNP 375
           +++ +  +YC V K +++  EM P  + Q+P
Sbjct: 471 IYLNLNEQYCLVMKDLKDGIEMKPKWLTQSP 501


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 384 IDRCGKHFGTILNYLRDGTVALPDSYKEIMELL 482
           +DR G+  GT++N + D +    DS  EI+++L
Sbjct: 534 LDRLGEDLGTVINQMNDFSKP-DDSISEIVKVL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,041
Number of Sequences: 5004
Number of extensions: 59614
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)