Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1303
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 69 3e-12
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 56 3e-08
07_03_0093 + 13330867-13332312 46 3e-05
11_03_0014 - 8965966-8965989,8966788-8966920,8967447-8967529,896... 32 0.44
02_04_0590 - 24154366-24155742 31 1.0
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 29 3.1
02_02_0026 + 6187860-6187940,6188136-6188207,6188302-6188395,618... 29 3.1
02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963 29 5.4
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255... 29 5.4
06_03_0536 + 21906583-21908037 28 7.2
06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534 28 7.2
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 7.2
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 69.3 bits (162), Expect = 3e-12
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRMEVLTDSE-GWILIDRCGKHFGTILNY 425
V LN+GG + TT+ TLT+ + +ML MFSGR + + G + +DR GKHF +LN+
Sbjct: 13 VLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPDTGMVFVDRDGKHFRHVLNW 72
Query: 426 LRDGTVALPD-SYKEIMELLAEAKYF 500
LRDG A+PD S E +LL EA+Y+
Sbjct: 73 LRDG--AVPDMSESEYQQLLREAEYY 96
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRME--VLTDSEGWILIDRCGKHFGTILN 422
+ LN+GG+ + TT TLT+ D ++L SG + T +G + +DR G+ F +LN
Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLN 64
Query: 423 YLRDGTV-ALPDSYKEIMELLAEAKYF 500
+LRDG V AL D+ E +LL EA+Y+
Sbjct: 65 WLRDGAVPALADA--EYRQLLREAEYY 89
>07_03_0093 + 13330867-13332312
Length = 481
Score = 46.0 bits (104), Expect = 3e-05
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = +3
Query: 249 TIVKLNVGGTLFYTTIGTLTK--SDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILN 422
++V LNVGG +F TT+ TL++ + + L ++ T + +DR + F T+L+
Sbjct: 4 SVVTLNVGGEVFQTTVATLSRAGASSPLASL------APTPASAPHFLDRDPRLFATLLS 57
Query: 423 YLRDGTVA--LPDSYKEIMELLAEAKYFLIES*LNLAYRP 536
+LR G +A PDS LLAEA++F +E L + P
Sbjct: 58 FLRRGRLAPTSPDSDPPSPALLAEARHFGVEGALLASLSP 97
>11_03_0014 -
8965966-8965989,8966788-8966920,8967447-8967529,
8967690-8967986,8970067-8970165
Length = 211
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -1
Query: 511 LSIRKYLASANNSMISL*LSGSATVPSRR*FKIVPKCFPQRSIKIHPSESVRTSI 347
+ +R+ +S N S SL SG A V R VP+ P K HP +T I
Sbjct: 1 MDVRRMSSSLNMSSSSLRSSGGADVDRRTTTATVPRRIPADQDKQHPKRETKTKI 55
>02_04_0590 - 24154366-24155742
Length = 458
Score = 31.1 bits (67), Expect = 1.0
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKS--DNMLRTMFSGRME----VLTDSEGW---ILIDRCGKHF 407
V+LNVGG +F T TL + D ML M D EG IDR + F
Sbjct: 8 VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYFIDRDPECF 67
Query: 408 GTILNYLRDGTVALPDSYKEIMELLAEAKYF 500
+L+ LR G + +P + + L EA Y+
Sbjct: 68 AVLLDLLRTGGLHVPPHVADGV-LCREALYY 97
>02_05_0833 + 32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 659 HNNKYSYTSTSDDNLLKNIELFDK 730
H+ +SY S D NLLK +E++D+
Sbjct: 946 HSGVFSYLSYRDPNLLKTLEVYDE 969
>02_02_0026 +
6187860-6187940,6188136-6188207,6188302-6188395,
6188480-6188640,6189053-6189123,6189231-6189312,
6189748-6189849,6189972-6190027,6190278-6190312,
6191495-6191579,6191658-6191717,6191819-6191858,
6192415-6192468
Length = 330
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 560 EPICRVPLITSQKEEQLLIMSTSKPVVKLLINRHNNKYSYTSTSDDNLLKNIELF 724
+P+ +PL ++E LL+ SK +V+ + + + D NLL N LF
Sbjct: 222 DPVTNLPLWYMREESPLLLYGFSKEIVECPVAESSEYQASALHCDSNLLFNGRLF 276
>02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963
Length = 288
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 638 VKLLINRHNNKYSYTSTSDDNLLKNIELFDKLSLRFSGRVL 760
+K++ +HNN S + + L N++L D +S +F+G +L
Sbjct: 63 LKIINLKHNNFTGELSKVNFSRLPNLKLLDLMSNKFTGEIL 103
>02_01_0354 +
2551675-2551874,2552721-2552833,2552982-2553170,
2553667-2553737,2553835-2553909,2553983-2554209,
2554361-2554550,2554627-2554692,2554807-2554895,
2554990-2555104,2555190-2555241,2555317-2555417,
2555516-2555629
Length = 533
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +3
Query: 270 GGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGTVAL 449
GG + G + +ML S +ME SE +I GT++ + G L
Sbjct: 167 GGEAILVSSGLVLYCGDMLAHTLS-KMEFSVSSEAFIRAPGTRSEIGTVIQGVLLGLFLL 225
Query: 450 PDSYKEIMELLA 485
P YK +++LA
Sbjct: 226 PLLYKSSLQVLA 237
>06_03_0536 + 21906583-21908037
Length = 484
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +2
Query: 512 LTESCLQALAKKEREAEPICRVPLITSQKEEQLLIMSTSKPVVKLLINRHNNKYSYTSTS 691
+T C + L+ ERE P+C +P S L+ ++ + LL + N TS+S
Sbjct: 363 VTAFCHRLLSGDEREWRPVC-MPEHRSNISSNLV---WTESLFALLYSILNQDICLTSSS 418
Query: 692 DDNLLKNI-ELFDKL--SLRFSGRVL 760
+NL+ I E+ KL SL+F +L
Sbjct: 419 TENLVSVIDEMASKLPRSLKFGNFLL 444
>06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534
Length = 96
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 244 DCLLTTFCDLPTLFQNEEITSTR*YETTSTPGLSTIFLFQMYLYYI 107
DC L FCD +L Q R + P LS + F YL+++
Sbjct: 8 DCCLQLFCDRCSLSQMYRELKNRGVNPANGPVLSKLSHFYWYLWFL 53
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Frame = +2
Query: 473 GVIGGG*IFPD*E--LTESCLQALAKKEREAEPICRVPLITSQKE--EQL---LIMSTSK 631
G GGG D E T + L + E+EP+ + ++ KE +Q+ ++
Sbjct: 450 GATGGGTPVVDMESFFTSVIVPELQAPDWESEPMLKATVLRFLKEFKDQIPKATALALLP 509
Query: 632 PVVKLLINRHNNKYSYTSTSDDNLL 706
V++ LI+ N +SY +T +NLL
Sbjct: 510 SVIRFLIHESNVVHSYAATFIENLL 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,218,153
Number of Sequences: 37544
Number of extensions: 378729
Number of successful extensions: 746
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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