Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1303
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4027| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 2e-35
SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 9e-15
SB_13351| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 3e-14
SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18) 63 3e-10
SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17) 60 1e-09
SB_12940| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18) 52 4e-07
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0) 36 0.048
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31) 35 0.084
SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0) 31 1.0
SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0) 31 1.0
SB_11146| Best HMM Match : K_tetra (HMM E-Value=1.1e-34) 31 1.0
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36) 29 3.1
SB_11652| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_4027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 146 bits (354), Expect = 2e-35
Identities = 66/89 (74%), Positives = 76/89 (85%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRD 434
VKLNVGG+L YTT+GTLTK DNMLR MFSGRMEVLTDS+GWILIDRCGKHFGTILN+LRD
Sbjct: 19 VKLNVGGSLHYTTLGTLTKHDNMLRAMFSGRMEVLTDSDGWILIDRCGKHFGTILNFLRD 78
Query: 435 GTVALPDSYKEIMELLAEAKYFLIES*LN 521
G++ LP E+ EL E+KY+LIE +N
Sbjct: 79 GSIPLPQCESELRELCTESKYYLIEQLVN 107
Score = 128 bits (310), Expect = 4e-30
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +2
Query: 509 ELTESCLQALAKKEREAEPICRVPLITSQKEEQLLIMSTSKPVVKLLINRHNNKYSYTST 688
+L C LAKK+++ +PICRVPLITS KEE+LL+ + SKP+VKL NR NNKYSYT
Sbjct: 104 QLVNQCEALLAKKQQQHDPICRVPLITSTKEERLLVSTASKPIVKLSYNRSNNKYSYTGQ 163
Query: 689 SDDNLLKNIELFDKLSLRFSGRVLLLK 769
SDDNLLKNIELFDKLSLRF+GR+L +K
Sbjct: 164 SDDNLLKNIELFDKLSLRFNGRILFIK 190
>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 77.8 bits (183), Expect = 9e-15
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +3
Query: 252 IVKLNVGGTLFYTTIGTLTKS-DNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYL 428
IV LNVGG ++ T+ TLT+ D+ML MFSGR + D+ G IDR G F ILN+L
Sbjct: 8 IVNLNVGGYVYTTSYKTLTRCRDSMLGAMFSGRQNLARDTRGNFFIDRDGSLFRYILNFL 67
Query: 429 RDGTVALPDSYKEIMELLAEAKYFLIE 509
R + LPDS+ E +L EA ++ IE
Sbjct: 68 RTSELCLPDSFDEFQQLSLEADFYQIE 94
>SB_13351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 77.4 bits (182), Expect = 1e-14
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Frame = +3
Query: 225 NVVKRQSVTIVKLNVGGTLFYTTIGTLTK-SDNMLRTMFSGRMEVLTDSEGWILIDRCGK 401
N ++ I+ LNVGG F TT+ TLT D+ML +MFSGR+ V DS G IDR G
Sbjct: 267 NKIQVDFPAIIDLNVGGNHFTTTLLTLTTFPDSMLGSMFSGRIPVNRDSNGRFFIDRDGT 326
Query: 402 HFGTILNYLRDGTVALPDSYKEIMELLAEAKYFLIE 509
F ILN+LR ++LP ++K+ LL EA ++ IE
Sbjct: 327 LFRYILNFLRSNVLSLPANFKDYELLLNEADFYQIE 362
>SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 76.2 bits (179), Expect = 3e-14
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +3
Query: 252 IVKLNVGGTLFYTTIGTLTKS-DNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYL 428
+V LNVGG F T + TLTK D+ML +MFSGR + DSEG IDR G +F +LNYL
Sbjct: 82 VVTLNVGGHFFTTRLSTLTKDQDSMLASMFSGRFNLDVDSEGRFFIDRDGTYFVFLLNYL 141
Query: 429 RDGTVALPDSYKEIMELLAEAKYFLIE 509
RD + P S M++ EA+Y+ IE
Sbjct: 142 RDPSQLPPASV--AMQVYREAQYYRIE 166
>SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18)
Length = 307
Score = 62.9 bits (146), Expect = 3e-10
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +3
Query: 249 TIVKLNVGGTLFYTTIGTLTK-SDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNY 425
++V LNVGG + +T TLT+ ++L M +G + V D +G IDR G F IL +
Sbjct: 83 SVVSLNVGGYNYTSTAYTLTQYPKSVLAQMCNGIIPVPRDLKGQQFIDRDGATFRYILTF 142
Query: 426 LRDGTVALPDSYKEIMELLAEAKYFLIE 509
LR G + +P+ YK ELL EA+++ +E
Sbjct: 143 LRTGKLTVPEGYKYFRELLTEAEFYRLE 170
>SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)
Length = 271
Score = 60.5 bits (140), Expect = 1e-09
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTK-SDNMLRTMFSGRM-EVLTDSEGWILIDRCGKHFGTILNYL 428
++LNVGG F T++ TLT+ D++L +FSGR E+ D+ G IDR G F IL+YL
Sbjct: 38 IELNVGGKYFSTSVFTLTRIKDSLLGRIFSGRQSELDKDNSGKYFIDRDG--FLYILDYL 95
Query: 429 RDGTVALPDSYKEIMELLAEAKYFLIE 509
R + +P+ + EI L EA ++ +E
Sbjct: 96 RSKALHIPEKFDEIERLKMEADFYELE 122
>SB_12940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/86 (36%), Positives = 51/86 (59%)
Frame = +3
Query: 252 IVKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLR 431
+VKLN+GG+ F +T+ TLT+ + + + D + +DR K F +LN++R
Sbjct: 3 LVKLNIGGSEFVSTLQTLTRRQSWFSVTDAYKKSPSGDYYT-LFLDRDPKVFRHVLNFIR 61
Query: 432 DGTVALPDSYKEIMELLAEAKYFLIE 509
D ++LP+++KE LL EA Y+ IE
Sbjct: 62 DERLSLPENFKEYELLLREATYYQIE 87
>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
Length = 495
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRD 434
V LN+GG F + TL + L ++ ++G I+R KHF ILN++R
Sbjct: 18 VHLNIGGKHFTVSRRTLMDDSSTLFHALLSSPKIKPQADGCYFINRDPKHFRYILNFIRT 77
Query: 435 GTVALPDSYKEIMELLAEAKYF 500
G LP+ K + E+L EA+++
Sbjct: 78 GIANLPEDAKSLNEILLEARFY 99
>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 330 TMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGTVALPDSYKEIMELLAEAKYFLIE 509
+MFSGR ++ DS G IDR G F IL+YLR+ +ALP+ + E L EA++F ++
Sbjct: 114 SMFSGRQKIPRDSRGRFFIDRDGVLFRYILDYLRNCKLALPEGFNERERLTMEAEHFKLK 173
>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
Length = 646
Score = 35.5 bits (78), Expect = 0.048
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 345 RMEVLTDSEGWILIDRCGKHFGTILNYLRDGTVA--LPDSYKEIMELLAEAKYF 500
R ++ S+ +DR G HF ILNYLRDG +A P + E+ EA ++
Sbjct: 115 RFKLKQASDESYFLDRDGTHFRHILNYLRDGFLAETFPTDEVILKEIQQEANFY 168
>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
Length = 414
Score = 34.7 bits (76), Expect = 0.084
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLR- 431
V++NV GT F T + TLT+ L S R + D+ +R F +IL Y +
Sbjct: 5 VRINVSGTTFETRLSTLTRFPRTLLGSHSKRQKHYNDTLQEFYFNRHRLAFESILFYYQS 64
Query: 432 DGTVALPD 455
+G + LPD
Sbjct: 65 NGRLILPD 72
>SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 363 DSEGWILIDRCGKHFGTILNYLRDGTVALPDSYKEIMELLAEAKYFLIE 509
D + +IDR ++F +LNYLR G + + E +L EA+++ IE
Sbjct: 513 DEDDAYMIDRDPRYFFPVLNYLRHGKLIIDRDLHE-EGVLEEAEFYSIE 560
>SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 548
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRD 434
V + V G FY L + R MFS +S+ IL + +LN++
Sbjct: 52 VTIVVNGKPFYAHRNVLAAASPYFRAMFSSHFREQNESKPVILENITADVMEELLNFIYA 111
Query: 435 GTVALPDSYKEIMELLAEAKYFLIES 512
GT+ + + +L++ + Y L+ S
Sbjct: 112 GTIKITPF--NVKDLVSASNYLLMNS 135
>SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 570
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRD 434
V + V G FY L + R MFS +S+ IL + +LN++
Sbjct: 52 VTIVVNGKPFYAHRNVLAAASPYFRAMFSSHFREQNESKPVILENITADVMEELLNFIYA 111
Query: 435 GTVALPDSYKEIMELLAEAKYFLIES 512
GT+ + + +L++ + Y L+ S
Sbjct: 112 GTIKITPF--NVKDLVSASNYLLMNS 135
>SB_11146| Best HMM Match : K_tetra (HMM E-Value=1.1e-34)
Length = 336
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKSDN-MLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLR 431
+ LNVGG +F L + N +L ++ G+ E DR F ILNYLR
Sbjct: 71 IALNVGGRVFVVRTHLLDRFPNSLLGSLQIGQFYDKNKQE--FFFDRDPDVFRYILNYLR 128
Query: 432 DGTVALPDSYKEIMELLAEAKYFLI 506
G + + D + LL E ++F I
Sbjct: 129 SGRLHVSDE-ECFNSLLDELEFFHI 152
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = -3
Query: 416 NSTEMLPTTINQNPPFRICENL-HPPTKHGS 327
NST++LP+T Q+ F+I + L +PPTK G+
Sbjct: 504 NSTKVLPSTYLQSASFKIEQTLMNPPTKGGA 534
>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 216 SRHYFKTKK*HQRDNTKRPVHPDSQLFSCSKCTYTTFCA 100
+RHYFK +K + + KR + + C+ C + CA
Sbjct: 477 NRHYFKNRKYFRNNVVKRDANLNKLSVKCATCRWVEQCA 515
>SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36)
Length = 407
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTK-SDNMLRTMFSGRMEVLTDSE-GWILIDRCGKHFGTILNYL 428
V +N GG F + TL +D L + ++++ D E G DR F +LNYL
Sbjct: 28 VVINCGGKRFEPYLSTLKNITDLPLSKITENKIKLDYDEESGEYFFDRHPAVFAQVLNYL 87
Query: 429 RDGTVALP 452
+ G + P
Sbjct: 88 QTGKLHCP 95
>SB_11652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 351 EVLTDSEGWILIDRCGKHFGTILNYLRDGTVALPDSYK--EIMEL 479
E+ D WI +DRCG+H I++Y G D+YK E +EL
Sbjct: 155 ELPFDRHDWI-VDRCGRHVRYIIDYYDVGD---EDAYKTGEFVEL 195
>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 218 ITKRC*KAVRHNSEVKCGRHIVLHYYRHAYEKR*HV 325
+T+ A+R+ + V C +H + Y RH + HV
Sbjct: 46 VTRYTRHAIRYTNHVTCYKHYITCYTRHVTNHKRHV 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,684,781
Number of Sequences: 59808
Number of extensions: 460599
Number of successful extensions: 1085
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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