Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1303
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.19 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.45 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 357 LTDSEGWILIDRCGKHFGTILNYLRDGTVALPD---SYKEIMELLAEAKY 497
           LT + G  L+     +F TIL  +RD T  LP+   +  +I +LL +++Y
Sbjct: 639 LTKARGHSLLVADRPNFVTILALVRDATARLPNGEGTRADICQLLKDSQY 688


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +2

Query: 590 SQKEEQLLIMSTSK--PVVKL--LINRHNNKYSYTSTSDDNLLKN 712
           S++E   L+++ SK   +V +  L+N+ NN   YTS+ + NL  N
Sbjct: 498 SEEEAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVN 542


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 198 F*NNVGRSQNVVKRQSVTIVKLNVGGTLFYT 290
           F NN+   QNVV  + V IV L   G++ ++
Sbjct: 3   FTNNIAAFQNVVLVKKVKIVLLIFYGSIMFS 33


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 156 HPDSQLFSCSKCTYT 112
           H  S+ F C KC+Y+
Sbjct: 11  HFGSKPFKCEKCSYS 25



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 174 NTKRPVHPDSQLFSCSKCTYTT-FC 103
           N+    H +   + C+ CTY T +C
Sbjct: 33  NSHLKSHSNVYQYRCANCTYATKYC 57


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 413 STEMLPTTINQNPPFRICE--NLHPPTKH 333
           ST ++PTT   N PF+  E  N+   T H
Sbjct: 82  STTIVPTTQEINKPFKRLELFNITTTTIH 110


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 244 DCLLTTFCDLPTLFQNEEITSTR 176
           D  +TT   +P+L  N  ITS +
Sbjct: 409 DITVTTDASVPSLVSNVRITSVK 431


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 446 RYCAVTKIIQNSTEMLPTTINQNPPFRICENLHPP 342
           R  +V + + N T ++    ++NP       LHPP
Sbjct: 494 RVLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHPP 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,978
Number of Sequences: 438
Number of extensions: 4141
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)