Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1303
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55000.2 68418.m06850 potassium channel tetramerisation domai... 77 2e-14
At5g55000.1 68418.m06849 potassium channel tetramerisation domai... 77 2e-14
At3g09030.1 68416.m01059 potassium channel tetramerisation domai... 48 5e-06
At5g41330.1 68418.m05023 potassium channel tetramerisation domai... 36 0.039
At3g55880.2 68416.m06210 expressed protein 32 0.36
At3g55880.1 68416.m06209 expressed protein 32 0.36
At3g46130.1 68416.m04992 myb family transcription factor (MYB48)... 29 4.5
At3g19170.1 68416.m02434 peptidase M16 family protein / insulina... 28 5.9
At1g23790.1 68414.m03001 expressed protein 28 5.9
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 28 7.9
>At5g55000.2 68418.m06850 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 298
Score = 76.6 bits (180), Expect = 2e-14
Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 4/88 (4%)
Frame = +3
Query: 249 TIVKLNVGGTLFYTTIGTLT--KSDNMLRTMFSGRMEVLTDSE-GWILIDRCGKHFGTIL 419
++V+LN+GG F TTI TLT + D+ML MFSGR + +S+ G++ IDR GKHF IL
Sbjct: 9 SMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHIL 68
Query: 420 NYLRDGTV-ALPDSYKEIMELLAEAKYF 500
N+LRDG + +L D + ELL EA Y+
Sbjct: 69 NWLRDGVIPSLSD--PDCSELLREADYY 94
>At5g55000.1 68418.m06849 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 290
Score = 76.6 bits (180), Expect = 2e-14
Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 4/88 (4%)
Frame = +3
Query: 249 TIVKLNVGGTLFYTTIGTLT--KSDNMLRTMFSGRMEVLTDSE-GWILIDRCGKHFGTIL 419
++V+LN+GG F TTI TLT + D+ML MFSGR + +S+ G++ IDR GKHF IL
Sbjct: 9 SMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHIL 68
Query: 420 NYLRDGTV-ALPDSYKEIMELLAEAKYF 500
N+LRDG + +L D + ELL EA Y+
Sbjct: 69 NWLRDGVIPSLSD--PDCSELLREADYY 94
>At3g09030.1 68416.m01059 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 460
Score = 48.4 bits (110), Expect = 5e-06
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Frame = +3
Query: 255 VKLNVGGTLFYTTIGTLTKS--DNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYL 428
VKLNVGG +F T T+ S D++L + + + + IDR + F ILN L
Sbjct: 10 VKLNVGGEIFETNASTIQSSCPDSLLAALSTS----TSHGSNPVFIDRDPEIFAVILNLL 65
Query: 429 RDGTV-ALPDSYKEIMELLAEAKYFLIES*LNLAYRP*P 542
R G + A ELL EA Y+ +ES L LA P P
Sbjct: 66 RTGRLPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPP 104
>At5g41330.1 68418.m05023 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 458
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/87 (28%), Positives = 47/87 (54%)
Frame = +3
Query: 252 IVKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLR 431
+V +NVGG +F TT TL+ + ++ S ++ T++ ++ DR F +L LR
Sbjct: 12 VVSINVGGRIFQTTKQTLSLAGT--DSLLS---QLATETTRFV--DRDPDLFSVLLYILR 64
Query: 432 DGTVALPDSYKEIMELLAEAKYFLIES 512
G + ++ +L+ E++Y+ IES
Sbjct: 65 TGNLPARSRAFDVRDLIDESRYYGIES 91
>At3g55880.2 68416.m06210 expressed protein
Length = 215
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 208 LFQNEEITSTR*YETTSTPGLSTIF-LFQMYLYYILCS 98
L EEI+ TR Y ++ G+ TIF LF M+L +I+ S
Sbjct: 3 LISKEEISKTRRYSSSLWRGIKTIFVLFTMFLSFIIFS 40
>At3g55880.1 68416.m06209 expressed protein
Length = 198
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 208 LFQNEEITSTR*YETTSTPGLSTIF-LFQMYLYYILCS 98
L EEI+ TR Y ++ G+ TIF LF M+L +I+ S
Sbjct: 3 LISKEEISKTRRYSSSLWRGIKTIFVLFTMFLSFIIFS 40
>At3g46130.1 68416.m04992 myb family transcription factor (MYB48)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 256
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 213 RHYFKTKK*HQRDNTKRPVHPDSQLFSCSKCTYTT 109
++Y++T + KRPV P S +CS + TT
Sbjct: 100 KNYWRTHMRKKAQEKKRPVSPTSSFSNCSSSSVTT 134
>At3g19170.1 68416.m02434 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 659 HNNKYSYTSTSDDNLLKNIELFD 727
H+ +SY S D NLLK ++++D
Sbjct: 948 HSGVFSYLSYRDPNLLKTLDIYD 970
>At1g23790.1 68414.m03001 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2
Query: 186 HQRDNTKRPVHP 151
H DNTKRPVHP
Sbjct: 491 HSADNTKRPVHP 502
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 662 NNKYSYTSTSDDNLLKNIELFDKLSLRFSGRV 757
+NK S T D LL N+E+ D + RFSG++
Sbjct: 615 DNKLS--GTIPDTLLANVEILDLRNNRFSGKI 644
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,672
Number of Sequences: 28952
Number of extensions: 309055
Number of successful extensions: 710
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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