Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.44 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   1.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   1.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 225 VIFKVSVFLNYCEIGSMCTLVGTACVSIYIS 317
           V+ +VS+  N   +G++  ++GT CV I I+
Sbjct: 731 VLLRVSILRNII-VGTLMMVLGTGCVRIKIT 760


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 317 DIYMFINIYFIAFDCFVEHTAYVFRC--VANGDGCFLGTLVYLNRLR 451
           DIYM + I  + F   V  +  +F C  + N     LG    L +L+
Sbjct: 254 DIYMIVYIIVVIFWYTVNASTNIFLCDEICNEGQTILGISYSLEKLK 300


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 317 DIYMFINIYFIAFDCFVEHTAYVFRC--VANGDGCFLGTLVYLNRLR 451
           DIYM + I  + F   V  +  +F C  + N     LG    L +L+
Sbjct: 254 DIYMIVYIIVVIFWYTVNASTNIFLCDEICNEGQTILGISYSLEKLK 300


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = +3

Query: 240 SVFLNYCEIGSMCTLVGTACVSIYISIFICL*IYISSLLTAS*NIQHMYLGALQMATGVS 419
           SVF NY    SM   +   C+ +  ++ + + I+ +  +  S NI  + L    +   + 
Sbjct: 61  SVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDMRNSTNIFLVNLSVADLMVLLV 120

Query: 420 *AP*CILTDYVKRVHPEETLIGR 488
             P  +L +   R  PE  ++GR
Sbjct: 121 CTP-TVLVEVNSR--PETWVLGR 140


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = +3

Query: 240 SVFLNYCEIGSMCTLVGTACVSIYISIFICL*IYISSLLTAS*NIQHMYLGALQMATGVS 419
           SVF NY    SM   +   C+ +  ++ + + I+ +  +  S NI  + L    +   + 
Sbjct: 61  SVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDMRNSTNIFLVNLSVADLMVLLV 120

Query: 420 *AP*CILTDYVKRVHPEETLIGR 488
             P  +L +   R  PE  ++GR
Sbjct: 121 CTP-TVLVEVNSR--PETWVLGR 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,517
Number of Sequences: 336
Number of extensions: 2682
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)