Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    29   0.35 
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   1.9  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   3.3  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +1

Query: 31  FYLRFKVA--VSTTQYYVQIYFVQ*NKVMFYSVELRIRNLTRQHF 159
           F L +++A  +ST   Y Q+++++ N +++Y  +L+   L+  H+
Sbjct: 263 FSLEYQLAQPISTVDMYAQVHYIRFNTLLYYRYQLQEILLSYNHY 307


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 298 VYLSIYRYLYVYKYIFHRF*LLRRTYSICI*VRC 399
           +  ++Y++L  Y + FH F LL  T  +C+  +C
Sbjct: 9   IVFALYKFLQRYFHSFHCFFLLCFTVMLCVVQQC 42


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = +2

Query: 287 RNCMCIYLYIDIYMFINIYFIAFDCF-VEHTA----YVFRCVANGDGCFLGTLVYLNRLR 451
           +N     L  DI+  I  Y  AFD   + H++    Y  R  A  + CF    + L   +
Sbjct: 40  KNSNLFLLNRDIWSLIINYLDAFDILRLMHSSRQFYYWLRKSAVDECCFNNNFLNLQPYQ 99

Query: 452 KTSPSRGDFDW 484
           +T P   D +W
Sbjct: 100 RTVPVASDLEW 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,156
Number of Sequences: 5004
Number of extensions: 43440
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)