Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               27   7.9  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 292 LHVYLSIYRYLYVYKYIF 345
           +++Y+ IY Y+Y+Y YI+
Sbjct: 11  IYIYIYIYIYIYIYIYIY 28



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 292 LHVYLSIYRYLYVYKYIF 345
           ++VY+ +Y Y+YVY YI+
Sbjct: 61  VYVYVYVYVYVYVYVYIY 78


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 292 LHVYLSIYRYLYVYKYIF 345
           L VY+ +Y Y+YVY Y++
Sbjct: 263 LRVYVYVYVYVYVYVYVY 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,823,065
Number of Sequences: 59808
Number of extensions: 307689
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)