Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    33   0.91 
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    33   0.91 
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    32   1.6  
AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    29   8.5  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 32.7 bits (71), Expect = 0.91
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 272 YVYLSRNCMCIYLYIDIYMFINIYFIAFDCFVEHTAYVFRCVANGDGCFLGTLVYLN 442
           Y+Y+   C+ IYLYI +Y+F  IY I    F+    +++ C+      F+   +Y+N
Sbjct: 52  YIYI---CLYIYLYIYLYIFTYIY-IYLHIFIYLHIFIYICICL--YIFIYVFIYIN 102



 Score = 30.3 bits (65), Expect = 4.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 292 LHVYLSIYRYLYVYKYIF-HRF*LLRRTYSICI 387
           L++YL IY Y++ Y YI+ H F  L     ICI
Sbjct: 57  LYIYLYIYLYIFTYIYIYLHIFIYLHIFIYICI 89



 Score = 30.3 bits (65), Expect = 4.8
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = +2

Query: 293 CMCIYLYIDIYMFINIY 343
           C+C+Y++I ++++INIY
Sbjct: 88  CICLYIFIYVFIYINIY 104



 Score = 29.9 bits (64), Expect = 6.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 292 LHVYLSIYRYLYVYKYIF 345
           +++Y+ +Y YLY+Y YIF
Sbjct: 51  IYIYICLYIYLYIYLYIF 68


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 32.7 bits (71), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 216 SMVVIFKVSVFLNYCEIGSMCTLVGTACVSIYISIFICL*IYIS 347
           SM V   V V+L  C   S+C  V    V +Y+ +F+C+ +Y+S
Sbjct: 62  SMCVSISVCVYLCLCVCVSVCVYVS---VCMYLCVFLCVCVYVS 102



 Score = 30.3 bits (65), Expect = 4.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 216 SMVVIFKVSVFLNYCEIGSMCTLVGT-ACVSIYISIFICL*IYISSLLTAS 365
           S+ V  +VSV L+      +C  V    CVS Y+ +++C+ +Y+   +  S
Sbjct: 140 SLCVCIRVSVCLSLRVCVCVCLCVSVYVCVSSYLCVYLCVCMYVCECVCVS 190



 Score = 29.9 bits (64), Expect = 6.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 237 VSVFLNYCEIGSMCTLVGTACVSIYISIFICL*IYIS 347
           VSVF+  C    +C  V + CVSI + +++CL + +S
Sbjct: 45  VSVFVCVCICVCVCVCV-SMCVSISVCVYLCLCVCVS 80


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 239 ICVFELL*NR*YVYLSRNC-MCIYLYIDIYMFINIYF-IAFDCFVEHTAYVFRCV 397
           ICV   L    + Y+  +  MC+Y YI +Y++ +I+  +  + +V    Y++ C+
Sbjct: 73  ICVHIYLCMYTHTYMCAHIHMCVYTYIYVYIYTHIHICVHINMYVSIYVYIYTCI 127



 Score = 30.7 bits (66), Expect = 3.7
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 167 HTIMSSHAGWL--NVILIFNGRNIQGICVFELL*NR*YVYLSRNCMCIYLYI-DIYMFIN 337
           HT M +H        I ++   +I  ICV   +    YVY+   C+ IY+Y+  +Y+   
Sbjct: 84  HTYMCAHIHMCVYTYIYVYIYTHIH-ICVHINMYVSIYVYIY-TCIQIYIYMYTLYVCTY 141

Query: 338 IYFIAFDCFVEHTAYVFRCVANGDGCFLGTLVYL 439
            Y   +     HT+ ++ CV     C L   +YL
Sbjct: 142 TYMCTYIHICIHTSIIYVCVYIHIQCPLNIYIYL 175


>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
 Frame = +2

Query: 164 MHTIMSSHAGWLNVILIFNGRNIQ-GICVFELL*NR*YVYLSRNCM--CIYLYIDIYMFI 334
           MHT M  H      I +++   I   ICVF       YVY    CM  CI++Y  ++M I
Sbjct: 77  MHTYMYIHIHAYAYIYVYSYTRICIHICVFICTHAYIYVYSYVQCMHMCIHMYTCMHMCI 136

Query: 335 NIYFIAFDCFVEHT---AYVFRCVANGDGCFLGTLVYL 439
            I   A  C    T     VF C       F  T VY+
Sbjct: 137 FICTHACICVFTSTHACICVFTCTHVYISVFTCTHVYI 174


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 293 CMCIYLYIDIYMFINIYFIAFDCFVEHT-AYVFRCV 397
           C+CIYL++  Y+ + I+   + C   H   Y+  C+
Sbjct: 22  CICIYLHVYTYICMYIHIYPYLCMYVHIYPYICTCI 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,145,568
Number of Sequences: 237096
Number of extensions: 1376092
Number of successful extensions: 5704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5649
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)