Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-936|AAN09179.1|  213|Drosophila melanogaster CG32741-PA...    29   5.7  
AY061159-1|AAL28707.1|  129|Drosophila melanogaster LD12764p pro...    28   7.5  

>AE014298-936|AAN09179.1|  213|Drosophila melanogaster CG32741-PA
           protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 293 CMC-IYLYIDIYMFINIYFIAFDC 361
           CM  +Y+YI IY++IN+Y   + C
Sbjct: 9   CMLQLYMYIYIYIYINLYIYIYLC 32


>AY061159-1|AAL28707.1|  129|Drosophila melanogaster LD12764p
           protein.
          Length = 129

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 CEIGSMCTLVGTACVSIYISIFICL 332
           C IG  C +    C+SIYI I+IC+
Sbjct: 60  CSIGCTCYM----CISIYIYIYICI 80


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,421,591
Number of Sequences: 53049
Number of extensions: 441149
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)