Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    27   9.2  
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    27   9.2  

>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 290 NCMCIYLYIDIYMFINIYFIAFDCFVEH 373
           NCM IY + + Y    + +IAF C   H
Sbjct: 256 NCMFIYAFFNGYKDETLAYIAFICLTYH 283


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 449 VIC*DTLRCLGNTRRHLQRT*IHMLYVLRSSQKR*NIYL 333
           +IC   L+C+GN  R  + T    +YV+R   K  N YL
Sbjct: 360 IICSIGLKCIGNILRSSKVTRNEQIYVVRHLLKILNRYL 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,960
Number of Sequences: 27780
Number of extensions: 245042
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)