Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    26   0.30 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.69 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.69 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.69 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.69 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 291 TACVSIYISIFICL*IYISSLLTAS*NIQH 380
           T  +S+Y  + ICL  + S+L   + N+ H
Sbjct: 272 TPLISLYYGVSICLVTFASALAVVTLNLHH 301


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 58  STTQYYVQIYFVQ*NKVMFYSVELRIRNLTRQHFFNAHHYEFSCWL 195
           S+ +Y V+    Q     +Y   LR  N ++  F NA H+    WL
Sbjct: 103 SSLKYEVEFLLQQ----QWYDPRLRYSNRSQYEFLNAIHHYDDIWL 144


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 58  STTQYYVQIYFVQ*NKVMFYSVELRIRNLTRQHFFNAHHYEFSCWL 195
           S+ +Y V+    Q     +Y   LR  N ++  F NA H+    WL
Sbjct: 103 SSLKYEVEFLLQQ----QWYDPRLRYSNRSQYEFLNAIHHYDDIWL 144


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 58  STTQYYVQIYFVQ*NKVMFYSVELRIRNLTRQHFFNAHHYEFSCWL 195
           S+ +Y V+    Q     +Y   LR  N ++  F NA H+    WL
Sbjct: 154 SSLKYEVEFLLQQ----QWYDPRLRYSNRSQYEFLNAIHHYDDIWL 195


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 58  STTQYYVQIYFVQ*NKVMFYSVELRIRNLTRQHFFNAHHYEFSCWL 195
           S+ +Y V+    Q     +Y   LR  N ++  F NA H+    WL
Sbjct: 103 SSLKYEVEFLLQQ----QWYDPRLRYSNRSQYEFLNAIHHYDDIWL 144


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 434 YLNRLRKTSPSRGDFDWE 487
           YL RL    P   +FDW+
Sbjct: 271 YLERLSNDLPHLEEFDWQ 288


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 434 YLNRLRKTSPSRGDFDWE 487
           YL RL    P   +FDW+
Sbjct: 271 YLERLSNDLPYLEEFDWQ 288


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 281 LSRNCMCIYLY 313
           ++R C+C YLY
Sbjct: 322 VARRCLCEYLY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,427
Number of Sequences: 438
Number of extensions: 2983
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)