Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1299X
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putati...    29   2.8  
At3g56850.1 68416.m06322 ABA-responsive element-binding protein ...    28   3.7  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    28   4.9  

>At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]
          Length = 759

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 412 PVAICNAPKYICCMFYEAVKSDEIYIYKHINID 314
           PV+ C A    CC+F+E++ S+  +I K ++++
Sbjct: 490 PVSDCTAESLECCLFFESMSSE--FIGKKMDVE 520


>At3g56850.1 68416.m06322 ABA-responsive element-binding protein 3
           (AREB3) identical to ABA-responsive element binding
           protein 3 (AREB3) [Arabidopsis thaliana] GI:9967421
          Length = 297

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -3

Query: 115 KTSLYSIAQNKSEHNIASLTRQL*SANRTVTLKSICAI 2
           ++SLYS+  ++ ++++ S  + L S N    LKS+C++
Sbjct: 19  QSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKSVCSV 56


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 412 PVAICNAPKYICCMFYEAVKSDEI 341
           PV+ C A    CC+F+E++ S+ I
Sbjct: 488 PVSDCTAESLECCLFFESMPSELI 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,697,929
Number of Sequences: 28952
Number of extensions: 204148
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)