Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1298
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    30   0.29 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   0.87 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   6.2  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = -2

Query: 295 YG-GSYLVEVLKRVQVSHCILICRALVNPEIPA*APLLLRECVRVPRIHSRSV--SFYSP 125
           YG G YL  +L  + +SHC+L C  L N      A  +L   V + ++HS +V   +YS 
Sbjct: 135 YGLGVYLYSILILLFLSHCVLRC-CLSNWSWTHRAMFILHSMVILMKLHSYNVVNGWYSY 193

Query: 124 SPGTLNV*RNLVGSRIRSFTSKKICIKFKELHCL 23
              +LN    L   +      ++  ++F E HCL
Sbjct: 194 CYHSLN---KLQSKKTDLDDDERSSVEFYE-HCL 223


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 544 HLIFVILELFPTQPRLRMSR*RFFLQLFRPPLSSRHSQIVRLVEY 410
           HLI+++    P  P  R S    +  L + PLS+RH+ +    E+
Sbjct: 36  HLIYILNRYQPISPNPRGSLNSKWYHLLQIPLSNRHTDLEENTEF 80


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 244 CILICRALVNPEIPA*APLLLRECVRVPRIHSRSVSFY 131
           CI     ++  +IP  A L++R  +RVP I  ++ +++
Sbjct: 80  CIQTTAFIIPVKIPHLATLIIRASLRVPLILEKAAAYF 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,328
Number of Sequences: 5004
Number of extensions: 40424
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)