Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1298
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0362 - 4742441-4743840,4743854-4744127                           32   0.39 
01_01_0064 + 509846-510556                                             29   3.6  
02_05_1351 - 35855543-35856751                                         27   8.3  

>04_01_0362 - 4742441-4743840,4743854-4744127
          Length = 557

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 157 CAVLERIRVVAGEPKRGFRDLLKRGR 234
           CA+ +RIR+V G+P RG  DLL  GR
Sbjct: 236 CAIYDRIRLVFGDPMRGL-DLLAIGR 260


>01_01_0064 + 509846-510556
          Length = 236

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 198 RLPCYYANAFEYRAFTLALSLSIPPPQ-ER*TFNATLLEVA-LEVSLQKKFVLNLKSCTV 25
           +LP   AN F   A  L  S+  PPPQ    T +  LL V+ +  +L      NL+ C +
Sbjct: 108 KLPSLAANPFPRLAAHLLASIPTPPPQPTACTLDDALLAVSVVHNTLALLLDYNLERCIL 167

Query: 24  YKKM 13
           Y ++
Sbjct: 168 YLRL 171


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 316 PWTRGLIYGGSYLVEVLKRVQVSHCILICRALV--NPEIPA*APLLLRECVRVPRIHSRS 143
           P+ R  ++  S LV++++   +SH   +   L   +P  P  +P        +PR+H  S
Sbjct: 138 PYLRSWVFPSSNLVDLVR--SLSHLFGLDPPLFTRSPNPPPPSPSPPIPATPLPRVHPSS 195

Query: 142 VSFYSPSP 119
            S  SPSP
Sbjct: 196 SSSPSPSP 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,012
Number of Sequences: 37544
Number of extensions: 246617
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)