Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1298
         (584 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93867-1|AAB63675.1|  533|Homo sapiens RNA polymerase III subuni...    29   9.1  

>U93867-1|AAB63675.1|  533|Homo sapiens RNA polymerase III subunit
           protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 24/99 (24%), Positives = 44/99 (44%)
 Frame = +1

Query: 100 VKRLTFLGRGNRKRQSESECAVLERIRVVAGEPKRGFRDLLKRGRLIYSGIXXXXXXXXX 279
           V +L+ +G+G R+R S+ +          AGEPK   +++L+  R  +  +         
Sbjct: 190 VPKLSLIGKGKRRRSSDED---------AAGEPKARDQNILQITRXPFQMMGFIGRPNLD 240

Query: 280 NMSPHI*DRASRVKDQISKKKRSSENLERVRLR*GELIT 396
               H  D+A  V    ++  ++S  + R  LR  E+ T
Sbjct: 241 RFRQHFRDQAI-VSAVANRMDQTSSEIVRTMLRMSEITT 278


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,763,353
Number of Sequences: 237096
Number of extensions: 1440300
Number of successful extensions: 5343
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5343
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)