Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1298
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 417 WNILFLACN*LTLP*SDALEIF**SFF 337
           +NI+  A N L +P ++ LE+F   FF
Sbjct: 49  YNIISAAVNRLNIPANEILELFGRMFF 75


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 189  CYYANAFEYRAFTLALSLSIPPPQER*TFNAT 94
            CY  N F +   T  L +  PP   + T  AT
Sbjct: 1346 CYVENTFGHDTVTHQLIVHAPPHSPQITLTAT 1377


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 168 EYRAFTLALSLSIPPPQER*TFNATLLEVALEVSLQKKF 52
           EYR +  AL  S P PQ   T +  L + ++    Q++F
Sbjct: 425 EYRLYNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQQF 463


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 417 WNILFLACN*LTLP*SDALEIF**SFF 337
           +NI+  A N L +P ++ LE+F   FF
Sbjct: 49  YNIISAAVNRLNIPANEILELFGRMFF 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,981
Number of Sequences: 438
Number of extensions: 3036
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)