Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1295
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.8  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.7  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 315  VRADDMVCATEVDVPRARYRPPPLV-SSDS 229
            VR   + C TE DVP A      LV S+DS
Sbjct: 1187 VRTTPIHCQTEQDVPEAPIAVKALVMSTDS 1216


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 231 NHC*RVAADDSGHAVHLPQWHRPYHP 308
           NH     + D G   HLP  H  + P
Sbjct: 389 NHYGYHYSGDGGEVAHLPNTHMGHEP 414


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 231 NHC*RVAADDSGHAVHLPQWHRPYHP 308
           NH     + D G   HLP  H  + P
Sbjct: 337 NHYGYHYSGDGGEVAHLPNTHMGHEP 362


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 120 HLDAINCLST*SCQLIL 70
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 120 HLDAINCLST*SCQLIL 70
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,769
Number of Sequences: 336
Number of extensions: 3864
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)