Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1295
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    50   3e-07
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    28   1.2  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   1.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.4  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +2

Query: 74  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFEN 229
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQD 53



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +3

Query: 312 ELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 449
           +L K G+ C+ T+  +++S Y E   P +AA + E L +YL+  GY
Sbjct: 82  KLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 300 YHPRELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 425
           +HP + G  G+ C+K   A +   YE+PI  + +  +    G
Sbjct: 188 FHPEKSGSAGLRCLK---AFLTGNYEQPISGEASKLIENSFG 226


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +3

Query: 606 SLVCTCDYFVD--SGPFLYAHR---LLKXXXXXXXXKFVLKFCF 722
           +++C C+YF+D  +GPFL +++   +L         + VLKF +
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLY 365


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -2

Query: 402  RPAEVGWVLHREK*PQLAVSSCNARRPCQVRADDM----VCATEVDVPRARYRPP 250
            R  E G ++  E   +   + C      ++RAD+     +C   V+VPR  +RPP
Sbjct: 1177 RQPEAGMMIECELCHEWYHAKCMKMSKKKLRADEKFICPICDYRVEVPRHSHRPP 1231


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 156 MCGQSRKASKFQKMKWRR 209
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,378
Number of Sequences: 5004
Number of extensions: 62099
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)