Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1295
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 52 6e-07
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 52 6e-07
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 49 3e-06
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 29 2.9
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 29 2.9
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 29 2.9
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 8.7
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 446
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 446
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 446
G G+ KT ++++ +Y+EP+ P Q +VE+LG+YLI G
Sbjct: 88 GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 524 NAVTYSPWKKYYLIVLLDHGELRPLITTGN*IF 426
NA+ +KKY L+ L+ +G++ PL+ G IF
Sbjct: 548 NAIAVEAYKKYILVSLIQNGQI-PLLDKGESIF 579
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -3
Query: 605 HHTDYAAIIYRISKQMNGPLITL*NIQN--AVTYSPWKKYYLIVLLDHGELRP 453
+H DY++++YR K + G I + Q+ VTYSP+ + V++ GEL P
Sbjct: 307 YHLDYSSLLYR--KSLLGRPIVMDVFQDYILVTYSPFDVHIFHVVIS-GELSP 356
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 330 RRPCQVRADDMVCATEVDVPRARYRPPPLVSSDSFSKPATIFATSSFEISK 178
+R C++ D V TE++ R R++P PLVS + IF ++ ISK
Sbjct: 128 KRLCKIVHDIEVLVTEMNAFRFRFQPQPLVSMQWRQTDSEIFDPTNI-ISK 177
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 252 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 127
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,581,242
Number of Sequences: 37544
Number of extensions: 409619
Number of successful extensions: 889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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