Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1295
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   30   1.7  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  29   3.9  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         29   5.1  
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)                    28   8.9  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 122 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESL 238
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV 45


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 449
           G  G   + T Q ++I  Y E + P   ++V EKL +Y    G+
Sbjct: 528 GNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 321 KVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 425
           K G+  +KT   ++++LY + + P       EKLG
Sbjct: 42  KTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 255 DDSGHAVHLPQWHRPYHPRELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYL 434
           D+ GH + LP W   +   ++GKV   C+K    + +    E  Q Q    V     E  
Sbjct: 239 DEQGHKICLPGWRGDH--CDIGKVSAECLKPSVRLDVIPNMEGAQHQDNVCVTPAGQESF 296

Query: 435 IT 440
           +T
Sbjct: 297 VT 298


>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
          Length = 584

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -2

Query: 255 PPPLVSSDSFSKP----ATIFATSSFEISKPSDFAHTLPS*PAMAAFVTHLDAINCLST* 88
           PPPL+S+ + SKP    A   A S+  +S      H +P+ PA    +T  D+ + L + 
Sbjct: 319 PPPLLSNSTSSKPPMSLAESLAASTQPVSSLISSVHLMPA-PAQ-RHITTSDSFSSLKSI 376

Query: 87  SCQLI 73
           + Q +
Sbjct: 377 AAQAV 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,923,633
Number of Sequences: 59808
Number of extensions: 485920
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)