Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1295
         (730 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor r...    33   1.4  
BC032652-1|AAH32652.1|  471|Homo sapiens MPN domain containing p...    30   9.8  
AK027887-1|BAB55432.1|  451|Homo sapiens protein ( Homo sapiens ...    30   9.8  
AC007292-2|AAD24593.1|  448|Homo sapiens R31167_2, partial prote...    30   9.8  
AC007292-1|AAD24592.1|  498|Homo sapiens R31167_1, partial prote...    30   9.8  

>AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor
           receptor superfamily, member 8 protein.
          Length = 595

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 336 NARRPCQVRADDMVCATEVDVPRARYRPPPLVSSDSFSKP 217
           N+ R C+ R   M+CAT     RAR  P P+ ++++ +KP
Sbjct: 276 NSSRTCECRPG-MICATSATNSRARCVPYPICAAETVTKP 314


>BC032652-1|AAH32652.1|  471|Homo sapiens MPN domain containing
           protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  GKIMSTNS*WHLDVSQKLPLPVMMAMCGQSRKASKFQKM-KWRRLWLALRMNHC*RVAAD 257
           G+  ++ S W     +KL  P   + CG +    K QK+ K++  WL L   H    AAD
Sbjct: 118 GQTFNSPSAWATHC-KKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAAD 176

Query: 258 DS 263
           +S
Sbjct: 177 ES 178


>AK027887-1|BAB55432.1|  451|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14981 fis, clone Y79AA1000202. ).
          Length = 451

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  GKIMSTNS*WHLDVSQKLPLPVMMAMCGQSRKASKFQKM-KWRRLWLALRMNHC*RVAAD 257
           G+  ++ S W     +KL  P   + CG +    K QK+ K++  WL L   H    AAD
Sbjct: 118 GQTFNSPSAWATHC-KKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAAD 176

Query: 258 DS 263
           +S
Sbjct: 177 ES 178


>AC007292-2|AAD24593.1|  448|Homo sapiens R31167_2, partial protein
           protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  GKIMSTNS*WHLDVSQKLPLPVMMAMCGQSRKASKFQKM-KWRRLWLALRMNHC*RVAAD 257
           G+  ++ S W     +KL  P   + CG +    K QK+ K++  WL L   H    AAD
Sbjct: 115 GQTFNSPSAWATHC-KKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAAD 173

Query: 258 DS 263
           +S
Sbjct: 174 ES 175


>AC007292-1|AAD24592.1|  498|Homo sapiens R31167_1, partial protein
           protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  GKIMSTNS*WHLDVSQKLPLPVMMAMCGQSRKASKFQKM-KWRRLWLALRMNHC*RVAAD 257
           G+  ++ S W     +KL  P   + CG +    K QK+ K++  WL L   H    AAD
Sbjct: 115 GQTFNSPSAWATHC-KKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAAD 173

Query: 258 DS 263
           +S
Sbjct: 174 ES 175


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,399,453
Number of Sequences: 237096
Number of extensions: 2236141
Number of successful extensions: 3812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3812
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)