Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1295
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p...    47   1e-05
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S...    47   1e-05
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic...    47   1e-05
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p...    46   3e-05
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller...    46   3e-05
At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin ...    30   1.8  
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem...    29   3.2  
At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin ...    29   3.2  
At1g12530.1 68414.m01451 hypothetical protein ; expression suppo...    29   4.2  
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi...    28   7.3  
At1g64300.1 68414.m07287 protein kinase family protein contains ...    27   9.6  

>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
           profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/43 (51%), Positives = 28/43 (65%)
 Frame = +3

Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 446
           G  G+   KT Q++V  LYEEP+ P Q   VVE+LG+YLI  G
Sbjct: 91  GAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQG 133



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +2

Query: 74  MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 226
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E+  I+  F+
Sbjct: 1   MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFD 58


>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
           SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
          Length = 168

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +2

Query: 74  MSWQDYVDKQLM---ASRCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
           MSWQ YVD  LM   A   +T AAI G DG+VWA+S  F ++  +E+  I   F     L
Sbjct: 38  MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTL 97



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +3

Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 446
           G  GV   KT  A+V  +Y+EP+ P Q   VVE LGEYLI  G
Sbjct: 125 GAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESG 167


>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
           to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
           thaliana]; identical to cDNA profilin (PRF2) GI:9965570
          Length = 131

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +2

Query: 74  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 226
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+A I   FE
Sbjct: 1   MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFE 55



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +3

Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 446
           G  GV   KT QA+V  +Y+EP+   Q   VVE+LG+YLI  G
Sbjct: 88  GPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESG 130


>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
           profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +2

Query: 74  MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 226
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E + I+  F+
Sbjct: 1   MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFD 58



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +3

Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 446
           G  G+   KT Q+ V  +YEEP+ P Q   VVE+LG+YL+  G
Sbjct: 91  GAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQG 133


>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
           Ara t 8 identical to profilin 1 (Allergen Ara t 8)
           SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
          Length = 131

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 74  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+  I   FE    L
Sbjct: 1   MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +3

Query: 318 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLI 437
           G  GV   KT QA+V   Y+EP+   Q   VVE+LG+YLI
Sbjct: 88  GPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLI 127


>At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin
           family protein very low similarity to Ser Thr protein
           kinase GI:2598067 from (Zea mays); contains Pfam lectin
           (probable mannose binding) domain PF01453
          Length = 919

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 322 LPSSRG*YGLCH*GRCTACPL 260
           LPS  G +G+C   +C ACPL
Sbjct: 279 LPSKCGAFGICEDNQCVACPL 299


>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA11)
           identical to SP|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
           thaliana}; strong similarity to calmodulin-stimulated
           calcium-ATPase [Brassica oleracea] GI:1805654
          Length = 1025

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 404 CGLLRLDGFFIERNDHSLLCLHAMHADLAKFARMIWSVPL 285
           CG+L   G  IE +D   L  H M A L K   M  S+PL
Sbjct: 686 CGILTAGGVAIEGSDFRNLPPHEMRAILPKIQVMARSLPL 725


>At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin
           family protein similar to S glycoprotein [Brassica rapa]
           GI:2351186; contains Pfam profile PF01453: Lectin
           (probable mannose binding)
          Length = 455

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LPSSRG*YGLCH*GRCTACP 263
           LPS  G YG C  G C ACP
Sbjct: 334 LPSFCGDYGYCDRGMCNACP 353


>At1g12530.1 68414.m01451 hypothetical protein ; expression
           supported by MPSS
          Length = 192

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 657 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 532
           R+K  ++ +NN +  +  S  L+RH   N+KT + S   F E
Sbjct: 32  RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73


>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
           to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
           thaliana]
          Length = 1505

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/62 (22%), Positives = 26/62 (41%)
 Frame = -2

Query: 657 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIEYTKCSYLFPVEKILSYST 478
           R+ +V +P+ N+ C         + ++   K  E   YH++  +KC  L  +     Y  
Sbjct: 243 RVCQVSDPERNYHCFYMLCA-APQEDVKKFKLEEPKKYHYLNQSKCLELDSINDAEEYHA 301

Query: 477 LR 472
            R
Sbjct: 302 TR 303


>At1g64300.1 68414.m07287 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 717

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 467 GELRPLITTGN*IFS*LLHDRCGLLRLDGFFIERNDHSLLCLHAMHADLAKFARMIWSVP 288
           G+L PL    + + S L H    L  L GF+ E      L +  MH DL  + +      
Sbjct: 269 GDLEPLNAEISSLLS-LCHSNI-LQYLCGFYDEERKECSLVMELMHKDLKSYMKENCGPR 326

Query: 287 LR*MYRVPAIV 255
            R ++ VP ++
Sbjct: 327 RRYLFSVPVVI 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,716,317
Number of Sequences: 28952
Number of extensions: 323975
Number of successful extensions: 716
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)