Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1294
(706 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 155 1e-36
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 144 2e-33
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 116 4e-25
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 116 6e-25
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 107 3e-22
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 106 6e-22
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 106 6e-22
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 106 6e-22
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 105 8e-22
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 105 8e-22
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 105 1e-21
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 104 2e-21
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 104 2e-21
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 103 3e-21
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 101 1e-20
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 100 7e-20
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 91 2e-17
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 88 2e-16
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 86 7e-16
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 76 7e-13
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 70 6e-11
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 63 7e-09
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 61 2e-08
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 60 4e-08
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 56 1e-06
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 50 6e-05
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 48 2e-04
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 48 3e-04
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 47 5e-04
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 45 0.002
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 45 0.002
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 44 0.003
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 44 0.003
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 44 0.003
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 43 0.008
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 41 0.034
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 40 0.060
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 40 0.060
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 39 0.14
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 39 0.14
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 38 0.32
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 38 0.32
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 37 0.42
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 37 0.42
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 37 0.42
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2; Thei... 37 0.42
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 37 0.55
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 37 0.55
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 36 0.73
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 36 0.73
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 36 0.73
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 36 0.97
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 36 0.97
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 36 1.3
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 36 1.3
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 35 1.7
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 35 1.7
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 35 1.7
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 35 1.7
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 35 1.7
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 35 1.7
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 35 2.2
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 35 2.2
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 35 2.2
UniRef50_Q8CG65 Cluster: SCO-spondin precursor; n=10; Eutheria|R... 35 2.2
UniRef50_A2VEC9 Cluster: SCO-spondin precursor; n=19; Eutheria|R... 35 2.2
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 35 2.2
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 34 3.0
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 34 3.0
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 34 3.0
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 34 3.0
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 34 3.0
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 34 3.0
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 34 3.0
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 34 3.9
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 34 3.9
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 34 3.9
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 34 3.9
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 34 3.9
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 33 5.2
UniRef50_Q9CM31 Cluster: Putative uncharacterized protein PM1013... 33 5.2
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 33 5.2
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 33 5.2
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 33 6.8
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 33 6.8
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 33 6.8
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 33 6.8
UniRef50_UPI0001556363 Cluster: PREDICTED: similar to T cell ant... 33 9.0
UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24... 33 9.0
UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5; Bradyrhizobiaceae... 33 9.0
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 33 9.0
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 33 9.0
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 33 9.0
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 155 bits (375), Expect = 1e-36
Identities = 71/72 (98%), Positives = 72/72 (100%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA
Sbjct: 60 KEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 119
Query: 434 DKRRGYHRQYFP 469
DKRRGYHRQYFP
Sbjct: 120 DKRRGYHRQYFP 131
Score = 77.8 bits (183), Expect = 2e-13
Identities = 37/57 (64%), Positives = 37/57 (64%)
Frame = +3
Query: 534 PPNQGGAQGDEGQERRHCTISAQFFPSQFSRWTPWGRSGPMNRGGFRRVRPRNFQPG 704
PPNQGGAQGDEGQE FF F G GPMNRGGFRRVRPRNFQPG
Sbjct: 154 PPNQGGAQGDEGQEGGIVPSQRSFFRRNFRGGRRGGGPGPMNRGGFRRVRPRNFQPG 210
Score = 62.9 bits (146), Expect = 7e-09
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIAEKVSGTVKWFNVKSGYGFINRNDT++
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKE 61
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 144 bits (349), Expect = 2e-33
Identities = 66/72 (91%), Positives = 69/72 (95%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI RNNPRKAVRSVGDGE VEFAVVAGEKG EAAGVTGPGGEPVKGSPYAA
Sbjct: 51 KEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGEKGCEAAGVTGPGGEPVKGSPYAA 110
Query: 434 DKRRGYHRQYFP 469
DKRRGY+RQY+P
Sbjct: 111 DKRRGYYRQYYP 122
Score = 62.9 bits (146), Expect = 7e-09
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIAEKVSGTVKWFNVKSGYGFINRNDT++
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINRNDTKE 52
Score = 55.2 bits (127), Expect = 1e-06
Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +3
Query: 534 PPNQGGAQGDEGQERRHCTISAQFFPSQFS-RWTPWGRSGPMNR-GGFRRVRPRNFQPG 704
PPNQGGAQGDE QE + + + + + R G SGPMNR GG+RR RPRN+Q G
Sbjct: 144 PPNQGGAQGDEIQEGGNVAPPQRSYNFRRNFRGGRRGGSGPMNRGGGYRRPRPRNYQQG 202
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 116 bits (280), Expect = 4e-25
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = +2
Query: 251 HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 430
+++D+FVHQ+AI +NNP+KAVRSVGDGE VEF VVAGEKG EAA VTGP GEPVKGSPYA
Sbjct: 51 NKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEKGSEAANVTGPEGEPVKGSPYA 110
Query: 431 ADKRRG 448
ADKRRG
Sbjct: 111 ADKRRG 116
Score = 56.8 bits (131), Expect = 5e-07
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
+IA KV+GTVKWFNVKSGYGFINRND ++
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINRNDNKQ 53
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 116 bits (279), Expect = 6e-25
Identities = 55/66 (83%), Positives = 59/66 (89%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
QEDVFVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAA
Sbjct: 32 QEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEKGNEAANVTGPQGEPVKGSQYAA 91
Query: 434 DKRRGY 451
+KRRG+
Sbjct: 92 EKRRGF 97
Score = 54.4 bits (125), Expect = 3e-06
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIA KV+G VKWFNVKSGYGFINR DT++
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINRGDTQE 33
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 107 bits (257), Expect = 3e-22
Identities = 52/71 (73%), Positives = 58/71 (81%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAA
Sbjct: 113 KEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAA 172
Query: 434 DKRRGYHRQYF 466
D+RR Y R Y+
Sbjct: 173 DRRR-YRRGYY 182
Score = 54.8 bits (126), Expect = 2e-06
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
V+A KV GTVKWFNV++GYGFINRNDT++
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKE 114
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 106 bits (254), Expect = 6e-22
Identities = 52/71 (73%), Positives = 57/71 (80%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI +NNPRK + SVGDGE VEF VV GEKG EAA VTGP G PV+GS YAA
Sbjct: 110 KEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAA 169
Query: 434 DKRRGYHRQYF 466
D+RR Y R YF
Sbjct: 170 DRRR-YRRGYF 179
Score = 54.8 bits (126), Expect = 2e-06
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
V+A KV GTVKWFNV++GYGFINRNDT++
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINRNDTKE 111
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 106 bits (254), Expect = 6e-22
Identities = 51/71 (71%), Positives = 58/71 (81%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VTGP G PV+GS YAA
Sbjct: 15 KEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGPDGVPVEGSRYAA 74
Query: 434 DKRRGYHRQYF 466
D+RR Y R Y+
Sbjct: 75 DRRR-YRRGYY 84
Score = 33.5 bits (73), Expect = 5.2
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = +3
Query: 213 NVKSGYGFINRNDTRK 260
NV++GYGFINRNDT++
Sbjct: 1 NVRNGYGFINRNDTKE 16
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 106 bits (254), Expect = 6e-22
Identities = 53/80 (66%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = +2
Query: 233 FHQQE*HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEP 409
F ++ ++EDVF+HQTAI +NNP+K +RSVGDGE VEF VV GEKG EAA VTGP GEP
Sbjct: 41 FVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEP 100
Query: 410 VKGSPYAADKRRGYHRQYFP 469
VKGS YAAD+RR Y +Y P
Sbjct: 101 VKGSKYAADRRR-YKPRYKP 119
Score = 46.8 bits (106), Expect = 5e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
V+A SG VKWFNV++GYGF+NR+D ++
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNRDDNKE 49
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 105 bits (253), Expect = 8e-22
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AA
Sbjct: 85 REDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAA 143
Query: 434 DKRRGY 451
DKRR +
Sbjct: 144 DKRRNF 149
Score = 60.5 bits (140), Expect = 4e-08
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIA KV+GTVKWFNVKSGYGFINRNDTR+
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTRE 86
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 105 bits (253), Expect = 8e-22
Identities = 51/70 (72%), Positives = 58/70 (82%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAA
Sbjct: 81 KEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 140
Query: 434 DKRRGYHRQY 463
D R ++R+Y
Sbjct: 141 D--RNHYRRY 148
Score = 55.6 bits (128), Expect = 1e-06
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIA KV GTVKWFNV++GYGFINRNDT++
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKE 82
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 105 bits (252), Expect = 1e-21
Identities = 50/72 (69%), Positives = 58/72 (80%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI +NNPRK +RSVGDGE VEF V+ KG EAA VTGPGG PVKGS YA
Sbjct: 25 KEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAP 84
Query: 434 DKRRGYHRQYFP 469
+KRR + R++FP
Sbjct: 85 NKRR-FRRRFFP 95
Score = 50.0 bits (114), Expect = 6e-05
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +3
Query: 189 VSGTVKWFNVKSGYGFINRNDTRK 260
V GTVKWFNV++GYGFINRNDT++
Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKE 26
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 104 bits (250), Expect = 2e-21
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = +2
Query: 260 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 439
D+FV Q I+ N P KAVRSVGDGE VEF VV GEKG EAA VTGP GE VKGSPYAADK
Sbjct: 93 DIFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPDGEAVKGSPYAADK 152
Query: 440 RRGYHRQYF 466
RRGY RQY+
Sbjct: 153 RRGY-RQYY 160
Score = 51.6 bits (118), Expect = 2e-05
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRN 248
+IA KV+GTVKWFNVKSGYGFINR+
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINRS 88
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 104 bits (250), Expect = 2e-21
Identities = 50/72 (69%), Positives = 58/72 (80%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI +NNPRK +RSVGDGE VEF VV KG EAA VTGPGG PVKGS YA
Sbjct: 43 KEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAKGSEAANVTGPGGIPVKGSRYAP 102
Query: 434 DKRRGYHRQYFP 469
+KRR + R+++P
Sbjct: 103 NKRR-FRRRFYP 113
Score = 53.6 bits (123), Expect = 5e-06
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIA V GTVKWFNV++GYGFINRNDT++
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINRNDTKE 44
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 103 bits (248), Expect = 3e-21
Identities = 50/72 (69%), Positives = 57/72 (79%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA
Sbjct: 116 KEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAP 175
Query: 434 DKRRGYHRQYFP 469
++R+ R++ P
Sbjct: 176 NRRKS--RRFIP 185
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
V+A +V GTVKWFNV++GYGFINRNDT++
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKE 117
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 101 bits (243), Expect = 1e-20
Identities = 49/72 (68%), Positives = 56/72 (77%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G V+GS YAA
Sbjct: 55 KEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAA 114
Query: 434 DKRRGYHRQYFP 469
D+RR ++P
Sbjct: 115 DRRRFRRGGWYP 126
Score = 56.8 bits (131), Expect = 5e-07
Identities = 23/29 (79%), Positives = 28/29 (96%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
+IA +VSGTVKWFNVKSGYGFINR+DT++
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINRDDTKE 56
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 99.5 bits (237), Expect = 7e-20
Identities = 49/64 (76%), Positives = 51/64 (79%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQ+AI RNNPRK RSVGDGE VEF VV G KG EAA VTGP G PV GS YAA
Sbjct: 46 KEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTKGNEAARVTGPEGAPVVGSKYAA 105
Query: 434 DKRR 445
DKRR
Sbjct: 106 DKRR 109
Score = 56.4 bits (130), Expect = 6e-07
Identities = 23/29 (79%), Positives = 28/29 (96%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
V+A KVSGTVKWFNVK+GYGFINR+DT++
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINRDDTKE 47
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 91.5 bits (217), Expect = 2e-17
Identities = 45/64 (70%), Positives = 49/64 (76%)
Frame = +2
Query: 278 TAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 457
TAI RNNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PVKGS +A ++RR R
Sbjct: 70 TAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRR 129
Query: 458 QYFP 469
Y P
Sbjct: 130 FYRP 133
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 88.2 bits (209), Expect = 2e-16
Identities = 40/61 (65%), Positives = 46/61 (75%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAAD 436
ED+FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD
Sbjct: 44 EDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAAD 103
Query: 437 K 439
+
Sbjct: 104 R 104
Score = 51.6 bits (118), Expect = 2e-05
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
V A KV GTVKWFNVK+GYGFINR DT +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNE 44
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 86.2 bits (204), Expect = 7e-16
Identities = 41/68 (60%), Positives = 49/68 (72%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
+EDVFVHQTA+ +N+PRK +RSVGD E VEF V GEK EAA VTG GG PV+ S Y A
Sbjct: 53 KEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDVEAASVTGLGGVPVQDSKYTA 112
Query: 434 DKRRGYHR 457
D+ H+
Sbjct: 113 DRNHCKHQ 120
Score = 34.3 bits (75), Expect = 3.0
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIA KV GT+K V +G G INRNDT++
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKE 54
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 76.2 bits (179), Expect = 7e-13
Identities = 37/58 (63%), Positives = 43/58 (74%)
Frame = +2
Query: 260 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 433
DVFVHQTAI +NNPRK + + GD E VEF V+ GEK EAA + GPGG V+GS YAA
Sbjct: 53 DVFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG--VQGSQYAA 108
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 69.7 bits (163), Expect = 6e-11
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2
Query: 251 HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 430
+QED+F+HQ+AI ++NP +SVG+GE + F +V G KG EAA V+ G+ VKGS YA
Sbjct: 50 NQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 109
Query: 431 ADKRRGYHR 457
RG R
Sbjct: 110 LRYPRGRGR 118
Score = 41.5 bits (93), Expect = 0.020
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 189 VSGTVKWFNVKSGYGFINRNDTRK 260
++G VKWFNVK GYGF+ RND ++
Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQE 52
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 62.9 bits (146), Expect = 7e-09
Identities = 33/58 (56%), Positives = 40/58 (68%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 430
EDVFVHQ+AI+R P K +S+G+ E V F VV G KG EA VTGP G+ V GS +A
Sbjct: 26 EDVFVHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGNEAMNVTGPNGDAVLGSKFA 82
Score = 38.3 bits (85), Expect = 0.18
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRND 251
G VKW+NVK GYGFI+R+D
Sbjct: 5 GKVKWYNVKKGYGFIHRDD 23
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAAD 436
ED+FVH++ I + N +S+GDGE VEF ++A + VTGPG +PVKGSP+ A
Sbjct: 57 EDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK-------VTGPGFKPVKGSPFVA- 108
Query: 437 KRRGYHR 457
+RG HR
Sbjct: 109 -KRGGHR 114
Score = 43.6 bits (98), Expect = 0.005
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +3
Query: 180 AEKVSGTVKWFNVKSGYGFINRNDT 254
+++++GTVKWFN K G+GFI R+DT
Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDT 55
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 61.3 bits (142), Expect = 2e-08
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 427
++D+FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 88 EKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
Score = 34.7 bits (76), Expect = 2.2
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFINRNDTRKMCLCIRLPSPVTTHVRLCARSATER 335
I + G VKW++V YGFI+RND K + H A+SATE+
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEK---------DIFVHQTAIAKSATEK 105
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 430
ED FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 115 EDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 55.6 bits (128), Expect = 1e-06
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
V+A KV GTVKWFNV++GYGFINRNDT++
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINRNDTKE 59
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 365 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 466
+G EAA VTGP G PV+GS YAAD+RR Y R Y+
Sbjct: 65 QGAEAANVTGPKGAPVQGSRYAADRRR-YRRGYY 97
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 194 GHCEMVQRQEWIWFHQQE*HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG- 370
G C+ ++ F + D+FVHQ+ I + RS+ +GE VEF+V+ E+
Sbjct: 6 GTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHADG----FRSLAEGEPVEFSVITDERSG 61
Query: 371 -FEAAGVTGPGGEPVKGSP 424
+AA VTGP G V+G+P
Sbjct: 62 KLKAADVTGPNGAAVRGAP 80
Score = 35.5 bits (78), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 186 KVSGTVKWFNVKSGYGFINRND 251
K++GT KWFN + GYGF+ +D
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDD 24
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRKMCLC--IRLPSPVTTHVRLCARSATERRWSL 347
V+A +V GTVKWFNV++GYGFINR + C C P T R +R+ L
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINRYRSAPGCGCGSRGRGGPSTRGARSASRAPDNPAKLL 115
Query: 348 PWLP 359
P+ P
Sbjct: 116 PFSP 119
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +2
Query: 260 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 421
DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 61 DVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 46.8 bits (106), Expect = 5e-04
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
VIA KV G V WFNV++GY FINRNDT++
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINRNDTKE 119
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAVRSVGDGEAVE 343
+ED FVHQT I +NNP K + SVGDGE VE
Sbjct: 118 KEDTFVHQTVIKKNNP-KYLHSVGDGETVE 146
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 45.2 bits (102), Expect = 0.002
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 194 GHCEMVQRQEWIWFHQQE*HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 373
G C+ + F + ED+FVHQ +N + RS+ E VE+ + +KG
Sbjct: 13 GVCKWFDSTKGFGFITPDDGSEDIFVHQ----QNIKVEGFRSLAQDERVEYEIETDDKGR 68
Query: 374 -EAAGVTGPGGEPVKGSPYAADKRRGYHR 457
+A V+GP G PVKG D+RRG R
Sbjct: 69 RKAVNVSGPNGAPVKG-----DRRRGRGR 92
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +2
Query: 185 ESIGHCEMVQRQEWIWFHQQE*HQE---DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 355
E+ G+C+ ++ F + + DVFVHQ++I + RS+ +G+ V+F
Sbjct: 26 EAFGNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSI----DMEGFRSLQEGDRVKFWYK 81
Query: 356 AGEKGFEAAGVTGPGGEPVKGS 421
+KG EA V GPGGE + G+
Sbjct: 82 PSKKGLEAVKVVGPGGEKLVGA 103
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 418
ED+FVHQ+AI + RS+ + +AVEF ++ G+ G +A+ VT PGG + G
Sbjct: 28 EDLFVHQSAIKSD----GYRSLNENDAVEFEIITGDDGRTKASDVTAPGGGALSG 78
Score = 39.9 bits (89), Expect = 0.060
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFINRND 251
+ E+V GTVKWFNV G+GFI+ +D
Sbjct: 1 MGERVKGTVKWFNVTKGFGFISPDD 25
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAAD 436
E++FVHQT I+ RSV +GE VE+ V + +A VTGP G VKG+P
Sbjct: 28 EEIFVHQTGISC----AGFRSVWEGEEVEYDVDDTDFAPKAVNVTGPDGVAVKGAPRRRH 83
Query: 437 KRR 445
+ R
Sbjct: 84 RNR 86
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 421
EDVFVHQ+AI + RS+ +GE V+ + +KG A VT PGG VKG+
Sbjct: 506 EDVFVHQSAIKASG----YRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGA 556
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+G+VKWFN+ G+GFI R+D
Sbjct: 484 TGSVKWFNLIKGFGFITRDD 503
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 42.7 bits (96), Expect = 0.008
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPV 412
ED+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG V
Sbjct: 29 EDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRAV 77
Score = 35.9 bits (79), Expect = 0.97
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 180 AEKVSGTVKWFNVKSGYGFINRND 251
+E+V GTVKWF+ G+GFI +D
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDD 26
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 40.7 bits (91), Expect = 0.034
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 314 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 421
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGS 146
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 39.9 bits (89), Expect = 0.060
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
ED+FVH AI + RS+ DGE VEF+VV G+KG +A V
Sbjct: 27 EDIFVHFRAIQGDG----YRSLKDGEKVEFSVVEGDKGLQAEEV 66
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 39.9 bits (89), Expect = 0.060
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 174 VIAEKVSGTVKWFNVKSGYGFINRND 251
V+AE+ +GTVKWFN GYGFI R +
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQRGN 92
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 260 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTG 394
DVFVH AI + R S+ +G+ VEF+V+ G+KG +A V G
Sbjct: 95 DVFVHYRAIRGDGHR----SLAEGQQVEFSVIQGQKGLQAEDVAG 135
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 38.7 bits (86), Expect = 0.14
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKA--VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 424
EDVFVHQ+ + + R VR G+ +EF + E+ A VTGP G P+K +P
Sbjct: 63 EDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDERR-RAKNVTGPAGAPLKKTP 119
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 38.7 bits (86), Expect = 0.14
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 415
++FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG +K
Sbjct: 35 ELFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 37.5 bits (83), Expect = 0.32
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGE 406
EDVF+H + P ++VRS G VEF V +GE+G +A+G+ P GE
Sbjct: 45 EDVFLHVNDLLI--PEESVRS---GLVVEFEVESGERGLKASGIRLPEGE 89
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 37.5 bits (83), Expect = 0.32
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 391
+DVFVH++A+A R + S+ +G+ V VV G+KG EA +T
Sbjct: 199 KDVFVHRSALA----RAGLDSLAEGQQVTMGVVEGQKGREAQSIT 239
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 37.1 bits (82), Expect = 0.42
Identities = 27/76 (35%), Positives = 32/76 (42%)
Frame = +2
Query: 194 GHCEMVQRQEWIWFHQQE*HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 373
G C+ + F + DVFVHQ I RS+ E VE+ EKG
Sbjct: 65 GKCKWFSLAKCYGFLTPDDGSGDVFVHQRVIKM----VGYRSLDTNEEVEYKFQFSEKGR 120
Query: 374 EAAGVTGPGGEPVKGS 421
EA VTG G KGS
Sbjct: 121 EATTVTGVDGGDCKGS 136
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 37.1 bits (82), Expect = 0.42
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+GTVKWFN + G+GFI+R D
Sbjct: 3 NGTVKWFNAEKGFGFISRED 22
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 37.1 bits (82), Expect = 0.42
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Frame = +2
Query: 254 QEDVFVHQTAIARNNPRKAV--RSVGDGEAVEFAVV---AGEKGFEAAGVTGPGGEPVKG 418
+ DVFVHQ+A+ R+ R G++VEF V ++ +A VTG GG P+K
Sbjct: 33 EPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEHESPTDERLKAVCVTGIGGAPLKA 92
Query: 419 SPYA----ADKRRGYHRQ 460
P + K+RG R+
Sbjct: 93 PPRTNYRRSSKKRGPRRE 110
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 37.1 bits (82), Expect = 0.42
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 418
ED+FVHQT+I + R++ +GE VEFAV GE G +A VT G G
Sbjct: 30 EDLFVHQTSIRSDG----FRTLSEGETVEFAVDHGEDGRTKAVEVTAVRGSYSSG 80
>UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2;
Theileria|Rep: Cold shock protein, putative - Theileria
annulata
Length = 95
Score = 37.1 bits (82), Expect = 0.42
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +2
Query: 194 GHCEMVQRQEWIWFHQQE*HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 373
G C+ ++ F E + EDVFVHQ+ I + RS+ + E VE V+
Sbjct: 6 GVCKWFNNKKGYGFITLE-NGEDVFVHQSEIYADG----FRSLHENEKVELEVIMDNNRK 60
Query: 374 EAAGVTGPGGEPVKGS 421
+A VTGP G V G+
Sbjct: 61 KAIHVTGPNGTHVTGT 76
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 36.7 bits (81), Expect = 0.55
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 189 VSGTVKWFNVKSGYGFINRNDTR 257
++GTVKWF+ + GYGF+ R+D +
Sbjct: 18 ITGTVKWFSKEKGYGFLTRDDNQ 40
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 36.7 bits (81), Expect = 0.55
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 183 EKVSGTVKWFNVKSGYGFINRND 251
++ GTVKWFNV G+GFI R +
Sbjct: 81 DREQGTVKWFNVSKGFGFITRGE 103
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 36.3 bits (80), Expect = 0.73
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRND 251
GTVKWFN + GYGFIN ++
Sbjct: 18 GTVKWFNTQKGYGFINPDE 36
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 36.3 bits (80), Expect = 0.73
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINR 245
GTVKWFNV GYGF+ R
Sbjct: 79 GTVKWFNVSKGYGFVTR 95
Score = 35.1 bits (77), Expect = 1.7
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
E++FVH +I+ N RK +R +G+ +EF+VV G+KG +A V
Sbjct: 99 EEIFVHFRSISGNG-RKVLR---EGQKIEFSVVDGDKGPQAEDV 138
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 36.3 bits (80), Expect = 0.73
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGS 421
+D+FVHQ++I + RS+ E+VEF V G +A V+GP G PV+G+
Sbjct: 38 DDLFVHQSSIRS----EGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQGN 89
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 35.9 bits (79), Expect = 0.97
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRNDTRKMCL 269
+GTVKW++ + GYGF++ ND R + L
Sbjct: 5 TGTVKWYDSERGYGFVSTNDGRDVFL 30
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 35.9 bits (79), Expect = 0.97
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFINRND 251
++E + GTVKWF+ + GYGFI D
Sbjct: 1 MSETLQGTVKWFSAQKGYGFITGED 25
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 35.5 bits (78), Expect = 1.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRND 251
G VKWFNVK G+GFI R++
Sbjct: 108 GLVKWFNVKKGFGFITRDN 126
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 35.5 bits (78), Expect = 1.3
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 183 EKVSGTVKWFNVKSGYGFINRND 251
E+ SGTVK+FN G+GFI R+D
Sbjct: 179 ERTSGTVKFFNTTKGFGFIARDD 201
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+GTVKWFNV+ G+GFI +D
Sbjct: 3 TGTVKWFNVQKGFGFIAPDD 22
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 35.1 bits (77), Expect = 1.7
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
EDVF H TAI + R++ +G+ VEF V G KG +A V
Sbjct: 24 EDVFCHHTAINMD----GFRTLQEGQQVEFEVTRGPKGLQAQNV 63
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+GTVKWFN GYGFI +D
Sbjct: 97 TGTVKWFNATKGYGFIQPDD 116
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRND 251
GTVKWFN + GYGFI D
Sbjct: 4 GTVKWFNAEKGYGFITGED 22
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFINRND 251
+ +K+ GTVKWFN G GFI R++
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQRDN 25
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFINRNDTRK 260
++ K++G VKWFN G+GFI +D K
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSK 28
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
+DVFVH TAI N R++ + + VEF++ G++G AA V
Sbjct: 28 KDVFVHFTAIQSNE----FRTLNENQKVEFSIEQGQRGPAAANV 67
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRND 251
GTVKWFN GYGFI +D
Sbjct: 18 GTVKWFNATKGYGFIQPDD 36
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 186 KVSGTVKWFNVKSGYGFINRND 251
K++GTVKWFN G+GFI+ D
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTD 24
Score = 32.7 bits (71), Expect = 9.0
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
+DVFVH +AI R+ +R +G++VEF V G+KG +A+ V
Sbjct: 26 KDVFVHFSAIQAQG-RRTLR---EGQSVEFIVTDGQKGPQASEV 65
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 183 EKVSGTVKWFNVKSGYGFI 239
E+ +GTVKWFN + GYGFI
Sbjct: 58 ERQNGTVKWFNDEKGYGFI 76
>UniRef50_Q8CG65 Cluster: SCO-spondin precursor; n=10; Eutheria|Rep:
SCO-spondin precursor - Mus musculus (Mouse)
Length = 4998
Score = 34.7 bits (76), Expect = 2.2
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 510 RRIRTSWTPPNQGGAQGDE----GQERRHCTISAQFFPSQFSRWTPWGRSGPMNRGGFRR 677
RR+R ++ PP GG + QERR C + A P +S W+PW + GG R
Sbjct: 3815 RRLR-AYHPPGPGGHWCPDILTAYQERRFCNLRACPVPGGWSHWSPWSWC-DRSCGGGRS 3872
Query: 678 VRPRN 692
+R R+
Sbjct: 3873 LRSRS 3877
>UniRef50_A2VEC9 Cluster: SCO-spondin precursor; n=19; Eutheria|Rep:
SCO-spondin precursor - Homo sapiens (Human)
Length = 5147
Score = 34.7 bits (76), Expect = 2.2
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 510 RRIRTSWTPPNQGGAQGDE----GQERRHCTISAQFFPSQFSRWTPWGRSGPMNRGGFRR 677
RR+R ++ PP GG QERR C + A P +SRW+PW + GG +
Sbjct: 3968 RRLR-AYRPPGPGGHWCPNILTAYQERRFCNLRACPVPGGWSRWSPWSWC-DRSCGGGQS 4025
Query: 678 VRPRN 692
+R R+
Sbjct: 4026 LRSRS 4030
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 186 KVSGTVKWFNVKSGYGFINRNDTRK 260
K++G VKWFN + G+GFI D K
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSK 28
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFINRND 251
++++ GTVKWFN G+GFI R +
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQREN 25
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRNDT 254
GTVKWFN + G+GFI +D+
Sbjct: 4 GTVKWFNAEKGFGFITPDDS 23
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein CspSt
- Streptococcus thermophilus
Length = 21
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+GTVKWFN + G+GFI D
Sbjct: 2 NGTVKWFNAEKGFGFITSED 21
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 34.3 bits (75), Expect = 3.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 186 KVSGTVKWFNVKSGYGFINRNDTRK 260
K+ G VKWFN G+GFI D K
Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSK 27
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRND 251
GTVKWFN + G+GFI R +
Sbjct: 4 GTVKWFNAEKGFGFIEREN 22
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 189 VSGTVKWFNVKSGYGFINRND 251
+ G VKWFN + G+GFI R D
Sbjct: 1 MQGRVKWFNAEKGFGFIERED 21
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 34.3 bits (75), Expect = 3.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 186 KVSGTVKWFNVKSGYGFINRNDTRK 260
K++G VKWFN G+GFI +D K
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSK 28
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 33.9 bits (74), Expect = 3.9
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 233 FHQQE*HQEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
F Q+ EDVF H TAI + R++ +G+ V+F V G KG +A V
Sbjct: 50 FITQDGGGEDVFCHHTAINMD----GFRTLQEGQKVQFDVARGPKGLQAQNV 97
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 33.9 bits (74), Expect = 3.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 183 EKVSGTVKWFNVKSGYGFINRND 251
++ G VKWFNV G+GF+ R++
Sbjct: 84 DREEGLVKWFNVSKGFGFVTRDN 106
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 391
+DVFVH +AI N ++++ +G+ VEF + G+KG A VT
Sbjct: 27 KDVFVHFSAIQGNG----LKTLAEGQNVEFEIQDGQKGPAAVNVT 67
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 186 KVSGTVKWFNVKSGYGFINRNDTRK 260
K+ G VKWFN G+GFI D K
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSK 27
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
SGTVKWFN G+GFI +D
Sbjct: 3 SGTVKWFNSTKGFGFIQPDD 22
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 33.9 bits (74), Expect = 3.9
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFI 239
++++ SGTVKWFN + G+GFI
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFI 21
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 33.5 bits (73), Expect = 5.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+G VKWFN + G+GF++R+D
Sbjct: 3 TGKVKWFNSEKGFGFLSRDD 22
>UniRef50_Q9CM31 Cluster: Putative uncharacterized protein PM1013;
n=1; Pasteurella multocida|Rep: Putative uncharacterized
protein PM1013 - Pasteurella multocida
Length = 195
Score = 33.5 bits (73), Expect = 5.2
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = -1
Query: 535 GVHDVLILLAWSSFTASSATLTREILAVVATALVCSIR*AFYWLTTGTSNTSCFKAFLPG 356
G +++++AW+ +T L EIL A +L ++ +W GT + FKA G
Sbjct: 103 GTETIMLMMAWAFYTVGLRRLYAEILTENAPSLAVYLK-KCHWRIEGTQREAIFKA---G 158
Query: 355 NHGKLHRLSV 326
+H +++
Sbjct: 159 EWRDVHNIAI 168
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 33.5 bits (73), Expect = 5.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 177 IAEKVSGTVKWFNVKSGYGFINRN 248
++ V+GTVKWFN G+GFI ++
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFIQQD 24
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 33.5 bits (73), Expect = 5.2
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 189 VSGTVKWFNVKSGYGFINR 245
VSG VKWFN + G+GFI R
Sbjct: 33 VSGIVKWFNDEKGFGFIER 51
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRNDTRK 260
GTVKWFN GYGF+ +D K
Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGK 77
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 33.1 bits (72), Expect = 6.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+ TVKWF+ K GYGFI+ D
Sbjct: 3 TSTVKWFDAKKGYGFIHHPD 22
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 33.1 bits (72), Expect = 6.8
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +2
Query: 260 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
DVFVH ++I + +S+ +G++V+F +V G+KG +A V
Sbjct: 26 DVFVHYSSIVADG----YKSLDEGQSVQFEIVQGQKGPQADNV 64
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 33.1 bits (72), Expect = 6.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINR 245
G VKWFN + GYGFI R
Sbjct: 4 GRVKWFNAEKGYGFIER 20
>UniRef50_UPI0001556363 Cluster: PREDICTED: similar to T cell
antigen receptor beta chain; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to T cell antigen
receptor beta chain - Ornithorhynchus anatinus
Length = 179
Score = 32.7 bits (71), Expect = 9.0
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 213 NVKSGYGFINRNDTRKMCLCIRLPSPVTTHVRLCARSATERRWSLPWL 356
++ GY ++R++TR L + SP T V LCA S T+ R + +L
Sbjct: 77 DLSKGYN-VSRSETRSFLLIVESASPDKTSVYLCASSNTQTRGAAGFL 123
>UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24;
Bacteria|Rep: Temperature acclimation protein B -
Xylella fastidiosa
Length = 85
Score = 32.7 bits (71), Expect = 9.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 195 GTVKWFNVKSGYGFINRND 251
GTVKWFN G+GFI N+
Sbjct: 23 GTVKWFNDNKGFGFITSNN 41
>UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5;
Bradyrhizobiaceae|Rep: Bll4766 protein - Bradyrhizobium
japonicum
Length = 743
Score = 32.7 bits (71), Expect = 9.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 302 RKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 421
R R++GDG+ +G AG +G GGE V G+
Sbjct: 52 RTRARAIGDGDTARLRAPSGAPAGNGAGSSGSGGEAVAGN 91
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 32.7 bits (71), Expect = 9.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRND 251
+GTVKWFN G+GFI ++D
Sbjct: 3 TGTVKWFNDAKGFGFIAQDD 22
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 32.7 bits (71), Expect = 9.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 192 SGTVKWFNVKSGYGFINRNDTRK 260
+GTVKWFN GYGFI ++ K
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGK 25
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 32.7 bits (71), Expect = 9.0
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 388
+DVFVH +AI N+ +++ +G+ VEF++ G+KG A V
Sbjct: 28 KDVFVHFSAIQGND----YKTLDEGQNVEFSIEQGQKGPSAVNV 67
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,443,586
Number of Sequences: 1657284
Number of extensions: 11052210
Number of successful extensions: 39028
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 37077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39000
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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