Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1294
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 45 5e-05
08_01_0202 - 1638978-1639571 43 2e-04
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 31 0.67
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.1
04_04_1582 - 34590698-34591199,34593849-34594690 29 3.6
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323... 29 4.8
03_01_0483 + 3689155-3689814 29 4.8
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 6.3
08_01_0229 + 1834102-1834358,1834442-1834901 28 8.3
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 8.3
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 8.3
>02_01_0158 - 1103461-1104186
Length = 241
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 418
ED+FVHQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG
Sbjct: 30 EDLFVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG 80
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 180 AEKVSGTVKWFNVKSGYGFINRND 251
A + GTVKWFN G+GFI+ +D
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDD 27
>08_01_0202 - 1638978-1639571
Length = 197
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK-GSPYA 430
ED+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG + GS +
Sbjct: 29 EDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPS 84
Query: 431 ADKRRGY 451
RGY
Sbjct: 85 GGGDRGY 91
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 180 AEKVSGTVKWFNVKSGYGFINRND 251
+E+V GTVKWF+ G+GFI +D
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDD 26
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 699 AGNCADALGGTLLYSLGQTSPTASTAKIATEKTALRW 589
+G +D + G LY LG+ +PTA+ K + + L W
Sbjct: 845 SGKVSDEVSGEELYCLGKLAPTAAVRKFISSEYLLGW 881
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 329 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 418
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 323 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 445
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>08_02_0869 -
22031889-22032017,22032114-22032204,22032289-22032389,
22033262-22033303,22033393-22033491,22033616-22033753,
22033853-22034428,22034897-22035070,22035155-22035290,
22035694-22035725,22036873-22037125,22037216-22037304,
22037771-22037824,22038801-22038992,22039065-22039229
Length = 756
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 700 GWKLRGRTRRNPPLFIGPDLPHGVHRENCDGKNCA 596
G +L+ R PP LPHGV CD C+
Sbjct: 254 GCRLQNRVSAAPPPLHAETLPHGVVTMRCDITTCS 288
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 323 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 448
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 323 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 448
GDG + V G +AA G G +PV+GS +D RG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 394 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 266
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 77 GVIGERRWWQRW 42
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 368 GFEAAGVTGPGGEPVKGSPYAADKRRG 448
G EA G +GPGGE D RRG
Sbjct: 75 GVEAPGGSGPGGERTMAPANIDDSRRG 101
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +2
Query: 311 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 424
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,875
Number of Sequences: 37544
Number of extensions: 336878
Number of successful extensions: 1288
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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