Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1294
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    88   5e-18
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    61   7e-10
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    60   1e-09
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    58   5e-09
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       31   1.1  
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       31   1.1  
U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    27   9.9  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 40/61 (65%), Positives = 46/61 (75%)
 Frame = +2

Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAAD 436
           ED+FVHQTAI  NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD
Sbjct: 44  EDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAAD 103

Query: 437 K 439
           +
Sbjct: 104 R 104



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +3

Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
           V A KV GTVKWFNVK+GYGFINR DT +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNE 44


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +2

Query: 254 QEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 427
           ++D+FVHQTAIA++   K  +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 88  EKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146



 Score = 34.7 bits (76), Expect = 0.065
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 177 IAEKVSGTVKWFNVKSGYGFINRNDTRKMCLCIRLPSPVTTHVRLCARSATER 335
           I   + G VKW++V   YGFI+RND  K          +  H    A+SATE+
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEK---------DIFVHQTAIAKSATEK 105


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 EDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 430
           ED FVHQTAI +++  K  +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 115 EDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173



 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 VIAEKVSGTVKWFNVKSGYGFINRN 248
           VI   V G VKWF+V+  YGF+ R+
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARD 108


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 EDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 430
           ED FVHQTAI +++  K  +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 115 EDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173



 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 VIAEKVSGTVKWFNVKSGYGFINRN 248
           VI   V G VKWF+V+  YGF+ R+
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARD 108


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = +2

Query: 254 QEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 427
           ++DVFVHQTAI++++  K  +R++ D E V F +V G+ G EAA VTGP G  V GS Y
Sbjct: 86  EKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 174 VIAEKVSGTVKWFNVKSGYGFINRNDTRK 260
           V+   + G VKW++V   YGFI+R+D  K
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEK 87


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 195 GTVKWFNVKSGYGFI 239
           G+ KWFNV  GYGF+
Sbjct: 24  GSCKWFNVSKGYGFV 38


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 195 GTVKWFNVKSGYGFI 239
           G+ KWFNV  GYGF+
Sbjct: 55  GSCKWFNVSKGYGFV 69


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 195 GTVKWFNVKSGYGFI 239
           G+ KWFNV  GYGF+
Sbjct: 55  GSCKWFNVSKGYGFV 69


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 195 GTVKWFNVKSGYGFI 239
           G+ KWFNV  GYGF+
Sbjct: 55  GSCKWFNVSKGYGFV 69


>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 591 ISAQFFPSQFSRWTPW 638
           I  Q++P+QF ++TPW
Sbjct: 236 IEKQYYPAQFKQFTPW 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,869
Number of Sequences: 27780
Number of extensions: 248866
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)