Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1294
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 39 0.004
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 36 0.020
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 36 0.020
At3g28480.1 68416.m03558 oxidoreductase, 2OG-Fe(II) oxygenase fa... 32 0.43
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 30 1.3
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 30 1.3
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 30 1.3
At3g45830.1 68416.m04960 expressed protein 29 2.3
At5g23680.1 68418.m02776 sterile alpha motif (SAM) domain-contai... 28 6.9
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 27 9.2
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 27 9.2
At5g02370.1 68418.m00160 kinesin motor protein-related kinesin, ... 27 9.2
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 27 9.2
At4g18740.2 68417.m02770 expressed protein 27 9.2
At4g18740.1 68417.m02769 expressed protein 27 9.2
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 27 9.2
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 415
++FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG +K
Sbjct: 35 ELFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 180 AEKVSGTVKWFNVKSGYGFINRND 251
A + +G V WFN GYGFI +D
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDD 31
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAGEKGFEAAGVTGPGGEPVKGS 421
+D+FVHQ++I + RS+ EAVEF V + +A V+GP G PV+G+
Sbjct: 34 DDLFVHQSSIRS----EGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGPDGAPVQGN 85
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 183 EKVSGTVKWFNVKSGYGFINRND 251
E+ G+VKWF+ + G+GFI +D
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDD 31
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 257 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGS 421
+D+FVHQ++I + RS+ E+VEF V G +A V+GP G PV+G+
Sbjct: 38 DDLFVHQSSIRS----EGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQGN 89
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 183 EKVSGTVKWFNVKSGYGFINRND 251
++ GTVKWF+ + G+GFI +D
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSD 35
>At3g28480.1 68416.m03558 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Mus musculus [SP|Q60715];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 316
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 706 CPGWKLRGRTRRNPPLFIGPDLPHGVHRENC 614
C W G ++NP +G D HG R++C
Sbjct: 281 CEKWAKAGECQKNPTYMVGSDKDHGYCRKSC 311
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 317 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 469
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 317 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 469
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 317 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 469
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +2
Query: 212 QRQEWIWFHQQE*HQEDVFVHQTAIARN--NPRK-AVRSVGDGEAVEFAVVAGEKGFEAA 382
+R+ W++ H+ QED T+ + P+K A + EAV A + E+ E
Sbjct: 1161 ERKLWVYLHRDR-EQEDFEDDGTSSTKKWKRPKKEAAEQTEEQEAVTVAFLGNEEQTE-- 1217
Query: 383 GVTGPGGEPVKGSPYAADKRRG 448
T G EP G P D +G
Sbjct: 1218 --TEMGSEPKTGEPTGLDGDQG 1237
>At5g23680.1 68418.m02776 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 295
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 507 ARRIRTSWTPPNQGGAQGDE 566
A+R+R++W N G QGDE
Sbjct: 156 AKRVRSNWATRNDGVEQGDE 175
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 285 SPVTTHVRLCARSATERRWSLPWL 356
+PV T VR+C + +TE SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 68 GERRWWQRW*NTPRPLLDV 12
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At5g02370.1 68418.m00160 kinesin motor protein-related kinesin,
Xenopus laevis, EMBL:XLA249840
Length = 628
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 661 LFIGPDLPHGVHRENCDGKNCAEMV 587
L + P LP + E+CDG++C ++
Sbjct: 25 LRVRPFLPREISDESCDGRSCVSVI 49
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 68 GERRWWQRW*NTPRPLLDV 12
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At4g18740.2 68417.m02770 expressed protein
Length = 214
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 207 WFNVKSGYGFINRNDTRKMCLCIRLPS 287
WF K G + + ++K C+C + PS
Sbjct: 57 WFQEKGGSSYTSMGRSKKGCVCCKKPS 83
>At4g18740.1 68417.m02769 expressed protein
Length = 245
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 207 WFNVKSGYGFINRNDTRKMCLCIRLPS 287
WF K G + + ++K C+C + PS
Sbjct: 57 WFQEKGGSSYTSMGRSKKGCVCCKKPS 83
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -1
Query: 487 SSATLTREILAVVATALVCSIR*AFYWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRA 314
S A E+L+VV T ++ + + +GT N SC + +L KL RLS D A
Sbjct: 73 SMAQHETEVLSVVRTLMLTIKEKDLHSVKSGTCNASCIRFYL----AKLLRLSGYDAA 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,449
Number of Sequences: 28952
Number of extensions: 233472
Number of successful extensions: 729
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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