Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1291
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-13|CAH60747.1|  123|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose tr...    29   3.4  
Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    29   4.5  

>Z54342-13|CAH60747.1|  123|Caenorhabditis elegans Hypothetical
           protein C08H9.3b protein.
          Length = 123

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 308 NIEHFFCHFLCLTISKYIDVSNKIMKTKRYVITYCKVYIYTS 183
           ++ HFF    CL ISK    S +I+  +R+ + +C + + ++
Sbjct: 73  SVAHFFGFDECLVISKTPRFSRRILIFQRFSVIFCDILLLSA 114


>Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical
           protein C50F4.14 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 121 PTFYVWLEILVNVMLCCFLSR 59
           P F  W + LV V LC FLS+
Sbjct: 60  PLFITWYQCLVTVFLCLFLSK 80


>AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose
           transporter protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 121 PTFYVWLEILVNVMLCCFLSR 59
           P F  W + LV V LC FLS+
Sbjct: 60  PLFITWYQCLVTVFLCLFLSK 80


>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 308 NIEHFFCHFLCLTISKYIDVSNKIMKTKRYVITYCKV 198
           ++ HFF    CL ISK    S +I+  +R+ + +C +
Sbjct: 73  SVAHFFGFDECLVISKTPRFSRRILIFQRFSVIFCDI 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,846
Number of Sequences: 27780
Number of extensions: 298401
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)