Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1291
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 301 SILFYVIFYLF*KSTLKSFF*RILIMFSLHVFFIL 405
           S L  + FYL   S  K     I I+ SLHVFF+L
Sbjct: 259 SFLTVLTFYLPSDSGEKVTL-SISILISLHVFFLL 292


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 301 SILFYVIFYLF*KSTLKSFF*RILIMFSLHVFFIL 405
           S L  + FYL   S  K     I I+ SLHVFF+L
Sbjct: 259 SFLTVLTFYLPSDSGEKVTL-SISILISLHVFFLL 292


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 314 MSFSIYFENQHLKVFFKE 367
           M FS+ F+N+ L VF  E
Sbjct: 544 MCFSLKFKNKKLPVFLAE 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,082
Number of Sequences: 438
Number of extensions: 3762
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)