Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1290X
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.1  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   5.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    24   8.9  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    24   8.9  

>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 197 FKVASYSTKEGDGEEEVDTEIIKQEAENTD 108
           F   S+  +  D E E +TEI K  +EN+D
Sbjct: 130 FSKNSFDARALDTESEDETEIEKSSSENSD 159


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 149 VDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLFSVC 33
           ++ +I  Q   NT   ++IK   +HY+  + ESS+ + C
Sbjct: 1   MNEKIRSQSVLNTLETFFIK--ENHYDMQREESSIVNAC 37


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 254 RSKEGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEA 120
           + KE +E+K S+   + SS    S +     GEE + T   K  A
Sbjct: 509 KQKEPLEEKRSFFPSFRSSLDGVSPTQGRKSGEENIRTIFAKPTA 553


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -1

Query: 260 TRRSKEGIEQKESWANEYLSSFKVASYSTKEG---DGEEEVDTEIIKQEAENTDPAYWIK 90
           T  S    E KESW N+ + S +  S +         +  +     K+ + ++ P++ ++
Sbjct: 431 TSSSTPTTENKESWTNQGIKSSQQRSANASPATSPSNQASIHASFTKESSTHSSPSFTLE 490

Query: 89  LL 84
            L
Sbjct: 491 SL 492


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 185 SYSTKEGDGEEEVDTEIIKQEAEN 114
           S S K GD E   + E   QEAEN
Sbjct: 158 SKSKKSGDYERTAENEEAAQEAEN 181


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 155 EEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLFSVCATL 24
           E+++T+  K + ENT     +  L   Y+Q   E   F V A L
Sbjct: 9   EQLETKTAKLKLENTTKRDTLIELEKKYQQKWQEEKAFEVDAPL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,514
Number of Sequences: 5004
Number of extensions: 24168
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)