Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1290X
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 44 7e-05
11_04_0280 - 15726326-15726583,15727572-15727640,15727776-157278... 28 2.9
01_06_1424 - 37269397-37270299 28 2.9
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 27 6.6
05_03_0628 - 16367841-16369259 27 6.6
04_04_0971 + 29801060-29801165,29801283-29801443,29801532-298016... 27 6.6
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 27 8.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 8.7
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 43.6 bits (98), Expect = 7e-05
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR---XXXXXXXXXXXXXXEAIHYDDRAVG 266
K+KM+L HLVV G KG N ++ELDDI+R IHYDD A+
Sbjct: 750 KKKMVLEHLVV--GRLTKGTNIVQEELDDIIRHGSKELFDDENDEAGKSCQIHYDDAAID 807
Query: 265 ELLD 254
LLD
Sbjct: 808 RLLD 811
Score = 35.9 bits (79), Expect = 0.014
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = -1
Query: 248 KEGIEQKESWANEYLSSFKVASYS----TKEGDGEEEVDTEIIKQEAENTDPA-YWIKLL 84
+E +E +E +E+L FKVA++ K +EE + + EA N+D A +W KLL
Sbjct: 818 EEPVEDEEE--DEFLKGFKVANFEYIDEAKALAAKEEEARKKAEAEAANSDRANFWDKLL 875
Query: 83 RHHYEQHQVE 54
+ Y+ +VE
Sbjct: 876 KDRYDVQKVE 885
>11_04_0280 -
15726326-15726583,15727572-15727640,15727776-15727879,
15727997-15728070,15728307-15728314
Length = 170
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAY 99
N+YL + +++ EG EE++ +I + + EN + Y
Sbjct: 18 NDYLEEVEDMTFNLIEGIDVEEIEAKIARYQQENAEQIY 56
>01_06_1424 - 37269397-37270299
Length = 300
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 257 RRSKEGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDP 105
RR K G + SW E +++ + A ++ + + D + KQE E +P
Sbjct: 241 RRFKSG-RRTASWVEEAIAAAEAAGEEEQQQENDAAADDDEKKQEVERYEP 290
>06_03_0810 - 24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 143 TEIIKQEAENTDPAYWIKLLRH 78
T ++K EAE AYW+ LL H
Sbjct: 1095 TLLMKHEAETKTNAYWLGLLAH 1116
>05_03_0628 - 16367841-16369259
Length = 472
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -1
Query: 257 RRSKEGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTD 108
+ +KEG ++E ANE + K++ ++ DG+E + +E ++ D
Sbjct: 192 KTAKEGDAEEEDGANEAGAEDKISKGDDEKKDGDESETKDGSSEEQKDAD 241
>04_04_0971 +
29801060-29801165,29801283-29801443,29801532-29801616,
29801722-29802116
Length = 248
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -1
Query: 245 EGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHY-- 72
E +E+KE E + K + KEG+ +EEV +K++ + Y+I H+
Sbjct: 157 EKVEKKEIIVEEKVEVKKKEAEKKKEGEKKEEVK---VKEKVKEVVAPYFIPCTHPHFID 213
Query: 71 ----EQHQVESSLFSVCA 30
E H + ++F C+
Sbjct: 214 YSHPELHGFKDTVFLHCS 231
>11_04_0340 - 16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -2
Query: 250 LRKE*NRKNLGLMNILALSKLLVIPLRK-AMVKRKSIQ 140
LR+ + K L L+++ A+ +LLV+PL K ++K S++
Sbjct: 937 LREMQSLKELELVHLHAVKELLVLPLEKLVLIKMASLE 974
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 170 EGDGEEEVDTEIIKQEAEN-TDPAYWIKLLRHHYEQHQVE 54
+ DG E+ KQ+A N + W KLLR +EQ+Q E
Sbjct: 1201 DNDGCEQASEA--KQDAANRVEENEWDKLLRVRWEQYQTE 1238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,647,501
Number of Sequences: 37544
Number of extensions: 148315
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -