Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1290X
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               68   3e-12
SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)                  28   2.9  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   3.9  
SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5)                28   3.9  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   5.1  
SB_55088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 32/67 (47%), Positives = 45/67 (67%)
 Frame = -1

Query: 248  KEGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYE 69
            ++ ++ +   ANEYL+SFKVASY  K+    +E D E++KQ  E TD  YW KLLRHHYE
Sbjct: 1232 EDEVKDEPMLANEYLASFKVASYIVKQ----KEEDVEVLKQAPETTDQDYWEKLLRHHYE 1287

Query: 68   QHQVESS 48
            Q + + +
Sbjct: 1288 QFREDEA 1294



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -2

Query: 436  KRKMMLTHLVVRPGMG-GKGANFTKQELDDILR 341
            K KMMLTHLVVRPG+G  K    +K ELDDIL+
Sbjct: 1090 KEKMMLTHLVVRPGLGSNKATIMSKSELDDILK 1122


>SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)
          Length = 844

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -1

Query: 251 SKEGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHY 72
           SKE  ++   ++ +   +  V     KEG GE   +TE +  E E  D     + + H  
Sbjct: 702 SKEDWDENREYSTQGAHNSSVGRECRKEGSGESGDNTEQVDMEEEGIDTLQTSQQIAHLE 761

Query: 71  EQHQVESS 48
            Q   E S
Sbjct: 762 NQIAEELS 769


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 102  RRISILCFLFYNFCIDFLFTIAFLSGITSNFERAK 206
            R ++   F FY+  + F+    F+S I  NF+R K
Sbjct: 1445 RLLAPFMFFFYSIVVVFILINMFISIIIENFQRVK 1479


>SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5)
          Length = 375

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -1

Query: 233 QKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQ 66
           QK+   NE LS  K      +E + E+     I  +  E  +P Y       HY +
Sbjct: 51  QKQQQLNELLSQSKDVQPKPQETNDEKAAPVRIKTEHKEEPEPPYMFDKQEGHYRR 106


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 260 TRRSKEGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTE 138
           T + K  +E KE    E LSS  + S   +    +EE+D E
Sbjct: 809 TGKEKSDVEDKEEMDEEKLSSLFIISACIRSPSHKEEMDEE 849


>SB_55088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 164 DGEEEVD-TEIIKQEAENTDPAYWIK 90
           D +EEV+ TEI  +E E  D  YW K
Sbjct: 49  DEQEEVEKTEIDAEEDEKEDDRYWYK 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,089,069
Number of Sequences: 59808
Number of extensions: 165152
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)