Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1290X
(437 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase ... 82 7e-16
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 82 7e-16
AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase D... 82 7e-16
AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase ... 82 7e-16
AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 82 7e-16
AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens ... 82 7e-16
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 82 7e-16
AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein. 82 7e-16
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 78 1e-14
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 78 1e-14
X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein. 73 3e-13
BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein. 73 3e-13
BC043347-1|AAH43347.1| 886|Homo sapiens general transcription f... 29 7.0
AL137453-1|CAB70745.1| 719|Homo sapiens hypothetical protein pr... 29 7.0
AF465407-1|AAL73493.1| 413|Homo sapiens transcription factor II... 29 7.0
AF133123-1|AAD41475.1| 886|Homo sapiens transcription factor II... 29 7.0
AC012486-1|AAX88853.1| 886|Homo sapiens unknown protein. 29 7.0
>AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 798 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 848
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR 341
KRKMMLTHLVVRPG+G K + TKQELDDIL+
Sbjct: 679 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 710
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 1282 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 1332
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR 341
KRKMMLTHLVVRPG+G K + TKQELDDIL+
Sbjct: 1163 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 1194
>AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 808
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 139 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 189
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR 341
KRKMMLTHLVVRPG+G K + TKQELDDIL+
Sbjct: 20 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 51
>AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 798 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 848
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR 341
KRKMMLTHLVVRPG+G K + TKQELDDIL+
Sbjct: 679 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 710
>AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 1282 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 1332
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR 341
KRKMMLTHLVVRPG+G K + TKQELDDIL+
Sbjct: 1163 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 1194
>AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens
cDNA FLJ44024 fis, clone TESTI4026524, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 671
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 2 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 52
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 1282 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 1332
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR 341
KRKMMLTHLVVRPG+G K + TKQELDDIL+
Sbjct: 1163 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 1194
>AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein.
Length = 978
Score = 82.2 bits (194), Expect = 7e-16
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E DG EEV+ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 306 NEYLSSFKVAQYVVREEDGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 356
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR 341
KRKMMLTHLVVRPG+G K + TKQELDDIL+
Sbjct: 187 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 218
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 78.2 bits (184), Expect = 1e-14
Identities = 37/52 (71%), Positives = 40/52 (76%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E D EE++ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 1280 NEYLSSFKVAQYVVREEDKIEEIEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 1330
Score = 60.1 bits (139), Expect = 3e-09
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR------XXXXXXXXXXXXXXEAIHYDDR 275
KRKMMLTHLVVRPG+G K + +KQELDDIL+ IHYD+
Sbjct: 1199 KRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNE 1258
Query: 274 AVGELLD 254
A+ LLD
Sbjct: 1259 AIARLLD 1265
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 78.2 bits (184), Expect = 1e-14
Identities = 37/52 (71%), Positives = 40/52 (76%)
Frame = -1
Query: 215 NEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQ 60
NEYLSSFKVA Y +E D EE++ EIIKQE EN DP YW KLLRHHYEQ Q
Sbjct: 1280 NEYLSSFKVAQYVVREEDKIEEIEREIIKQE-ENVDPDYWEKLLRHHYEQQQ 1330
Score = 60.1 bits (139), Expect = 3e-09
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR------XXXXXXXXXXXXXXEAIHYDDR 275
KRKMMLTHLVVRPG+G K + +KQELDDIL+ IHYD+
Sbjct: 1199 KRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNE 1258
Query: 274 AVGELLD 254
A+ LLD
Sbjct: 1259 AIARLLD 1265
>X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein.
Length = 1912
Score = 73.3 bits (172), Expect = 3e-13
Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Frame = -1
Query: 254 RSKEGIEQKE-SWANEYLSSFKVASYSTKEGD--GEEEVDTEIIKQEAENTDPAYWIKLL 84
R+++ E E NEYLSSFKVA Y +E + EEEV+ EIIKQE E+ DP YW KLL
Sbjct: 1260 RNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQE-ESVDPDYWEKLL 1318
Query: 83 RHHYEQHQ 60
RHHYEQ Q
Sbjct: 1319 RHHYEQQQ 1326
Score = 57.6 bits (133), Expect = 2e-08
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR----------XXXXXXXXXXXXXXEAIH 287
K+KMMLTHLVVRPG+G K + +KQELDDIL+ IH
Sbjct: 1189 KKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIH 1248
Query: 286 YDDRAVGELLDGLRKE*NRKNLGLMN 209
YDD+A+ LLD + E L MN
Sbjct: 1249 YDDKAIERLLDRNQDETEDTELQGMN 1274
>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
Length = 1937
Score = 73.3 bits (172), Expect = 3e-13
Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Frame = -1
Query: 254 RSKEGIEQKE-SWANEYLSSFKVASYSTKEGD--GEEEVDTEIIKQEAENTDPAYWIKLL 84
R+++ E E NEYLSSFKVA Y +E + EEEV+ EIIKQE E+ DP YW KLL
Sbjct: 1257 RNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQE-ESVDPDYWEKLL 1315
Query: 83 RHHYEQHQ 60
RHHYEQ Q
Sbjct: 1316 RHHYEQQQ 1323
Score = 57.6 bits (133), Expect = 2e-08
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Frame = -2
Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILR----------XXXXXXXXXXXXXXEAIH 287
K+KMMLTHLVVRPG+G K + +KQELDDIL+ IH
Sbjct: 1186 KKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIH 1245
Query: 286 YDDRAVGELLDGLRKE*NRKNLGLMN 209
YDD+A+ LLD + E L MN
Sbjct: 1246 YDDKAIERLLDRNQDETEDTELQGMN 1271
>BC043347-1|AAH43347.1| 886|Homo sapiens general transcription
factor IIIC, polypeptide 3, 102kDa protein.
Length = 886
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 170 EGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLF 42
+GD E+ + E+I +D W++L EQ ++ ++F
Sbjct: 196 QGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIF 238
>AL137453-1|CAB70745.1| 719|Homo sapiens hypothetical protein
protein.
Length = 719
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 170 EGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLF 42
+GD E+ + E+I +D W++L EQ ++ ++F
Sbjct: 29 QGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIF 71
>AF465407-1|AAL73493.1| 413|Homo sapiens transcription factor
IIIC102 short isoform protein.
Length = 413
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 170 EGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLF 42
+GD E+ + E+I +D W++L EQ ++ ++F
Sbjct: 196 QGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIF 238
>AF133123-1|AAD41475.1| 886|Homo sapiens transcription factor
IIIC102 protein.
Length = 886
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 170 EGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLF 42
+GD E+ + E+I +D W++L EQ ++ ++F
Sbjct: 196 QGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIF 238
>AC012486-1|AAX88853.1| 886|Homo sapiens unknown protein.
Length = 886
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 170 EGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLF 42
+GD E+ + E+I +D W++L EQ ++ ++F
Sbjct: 196 QGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIF 238
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,839,699
Number of Sequences: 237096
Number of extensions: 775317
Number of successful extensions: 5905
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5893
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -