Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1290X
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    86   1e-17
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    86   1e-17
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      86   1e-17
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    85   2e-17
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    85   2e-17
Z66565-9|CAO78711.1|  115|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z66565-8|CAA91481.2|  308|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U41557-1|AAA83300.1|  418|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AC017117-6|AAF16615.1|  201|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    27   6.0  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    27   6.0  
AC119287-1|AAO38568.1|  218|Caenorhabditis elegans Glutathione s...    27   6.0  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    27   7.9  
AF039042-6|AAC48244.1|  219|Caenorhabditis elegans Glutathione s...    27   7.9  
AC119287-2|AAM19064.2|  218|Caenorhabditis elegans Glutathione s...    27   7.9  

>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 2/61 (3%)
 Frame = -1

Query: 236  EQKESWANEYLSSFKVASYSTKEGDG--EEEVDTEIIKQEAENTDPAYWIKLLRHHYEQH 63
            E+KE W NEYLSSFKVA+Y+TKE D   ++E +TE+IK+  E  DP YW KLL+HHYEQ 
Sbjct: 1166 EKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKEGTEEQDPNYWEKLLKHHYEQD 1225

Query: 62   Q 60
            Q
Sbjct: 1226 Q 1226



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
 Frame = -2

Query: 436  KRKMMLTHLVVRPGMGGK-GANFTKQELDDILR 341
            K+KM+LTHLVVR G+G K G + +K ELDD+LR
Sbjct: 1079 KKKMLLTHLVVRAGLGAKDGKSMSKTELDDVLR 1111


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 2/61 (3%)
 Frame = -1

Query: 236  EQKESWANEYLSSFKVASYSTKEGDG--EEEVDTEIIKQEAENTDPAYWIKLLRHHYEQH 63
            E+KE W NEYLSSFKVA+Y+TKE D   ++E +TE+IK+  E  DP YW KLL+HHYEQ 
Sbjct: 1166 EKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKEGTEEQDPNYWEKLLKHHYEQD 1225

Query: 62   Q 60
            Q
Sbjct: 1226 Q 1226



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
 Frame = -2

Query: 436  KRKMMLTHLVVRPGMGGK-GANFTKQELDDILR 341
            K+KM+LTHLVVR G+G K G + +K ELDD+LR
Sbjct: 1079 KKKMLLTHLVVRAGLGAKDGKSMSKTELDDVLR 1111


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 2/61 (3%)
 Frame = -1

Query: 236  EQKESWANEYLSSFKVASYSTKEGDG--EEEVDTEIIKQEAENTDPAYWIKLLRHHYEQH 63
            E+KE W NEYLSSFKVA+Y+TKE D   ++E +TE+IK+  E  DP YW KLL+HHYEQ 
Sbjct: 1166 EKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKEGTEEQDPNYWEKLLKHHYEQD 1225

Query: 62   Q 60
            Q
Sbjct: 1226 Q 1226



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
 Frame = -2

Query: 436  KRKMMLTHLVVRPGMGGK-GANFTKQELDDILR 341
            K+KM+LTHLVVR G+G K G + +K ELDD+LR
Sbjct: 1079 KKKMLLTHLVVRAGLGAKDGKSMSKTELDDVLR 1111


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
 Frame = -1

Query: 236  EQKESWANEYLSSFKVASYSTKEGDG---EEEVDTEIIKQEAENTDPAYWIKLLRHHYEQ 66
            E+K  W NEYLSSFKVASY TKE +G   EEE +TE+IK++ +  DP YW KLL+HHYEQ
Sbjct: 1152 EEKAEWQNEYLSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDPDYWEKLLKHHYEQ 1211



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = -2

Query: 436  KRKMMLTHLVVRPGMGGK-GANFTKQELDDILR 341
            K+KM+L HLVVR G+GGK G   +K ELDD+LR
Sbjct: 1065 KKKMLLNHLVVRAGLGGKEGKTMSKTELDDVLR 1097


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
 Frame = -1

Query: 236  EQKESWANEYLSSFKVASYSTKEGDG---EEEVDTEIIKQEAENTDPAYWIKLLRHHYEQ 66
            E+K  W NEYLSSFKVASY TKE +G   EEE +TE+IK++ +  DP YW KLL+HHYEQ
Sbjct: 1152 EEKAEWQNEYLSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDPDYWEKLLKHHYEQ 1211



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = -2

Query: 436  KRKMMLTHLVVRPGMGGK-GANFTKQELDDILR 341
            K+KM+L HLVVR G+GGK G   +K ELDD+LR
Sbjct: 1065 KKKMLLNHLVVRAGLGGKEGKTMSKTELDDVLR 1097


>Z66565-9|CAO78711.1|  115|Caenorhabditis elegans Hypothetical
           protein T04F8.7b protein.
          Length = 115

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 224 SWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLL----RHHYEQHQ 60
           SW     +   VA+  +  G G++  D   I +  E  +P  + + +    RH+YE+H+
Sbjct: 16  SWEKPQYAGHHVANQHSSSGSGKKRGDVRDIFRIEEQPEPEPYFRSVSARARHNYEKHR 74


>Z66565-8|CAA91481.2|  308|Caenorhabditis elegans Hypothetical
           protein T04F8.7a protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 224 SWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLL----RHHYEQHQ 60
           SW     +   VA+  +  G G++  D   I +  E  +P  + + +    RH+YE+H+
Sbjct: 209 SWEKPQYAGHHVANQHSSSGSGKKRGDVRDIFRIEEQPEPEPYFRSVSARARHNYEKHR 267


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 236 EQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYW 96
           E  E+WAN Y S  +    + K     + +   +IK E + TD  YW
Sbjct: 438 ELYENWAN-YWSDKRNEENAIKWKQETDNIPEVVIKNEDDETDVLYW 483


>U41557-1|AAA83300.1|  418|Caenorhabditis elegans Hypothetical
           protein C50F7.6 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 260 TRRSKEGIEQKESWANEYLSSFKVASYS 177
           T+ +KE  ++KE  A EY   F++ SYS
Sbjct: 196 TKVNKEESDRKEKEAEEYAKRFRIPSYS 223


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = -1

Query: 191  VASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSLFSV 36
            + +  ++E +  E+ D    ++  +  D   W++L+  H+E+H  + S+  V
Sbjct: 1461 IITKKSQELETREKTDFPQPREPEKIVDEKRWVELVEQHFEEHLSQRSISPV 1512


>AC017117-6|AAF16615.1|  201|Caenorhabditis elegans Hypothetical
           protein F43C11.4 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  VMPEKFDPVRR-ISILCFLFYNFCIDFLFTIAFLSGITSNFERAKIFISPRFFLFYSFL 248
           V+  KF  + + +S +  +  N C +F+    F+  + S F R+ I   P F  F SF+
Sbjct: 83  VLLYKFSKISKFVSQMMTVEENGCTEFVCPEDFVPRVVSTFSRSSIETPPGFTDFTSFI 141


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 39   RKQRGFYLMLFVVMPEKFDPVRRISI 116
            RK+R  Y MLF  +P+ F P+ R  +
Sbjct: 1009 RKKREQYSMLFPNVPQPFQPLNRFDV 1034


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 39   RKQRGFYLMLFVVMPEKFDPVRRISI 116
            RK+R  Y MLF  +P+ F P+ R  +
Sbjct: 1009 RKKREQYSMLFPNVPQPFQPLNRFDV 1034


>AC119287-1|AAO38568.1|  218|Caenorhabditis elegans Glutathione
           s-transferase protein34 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 212 EYLSSFKVASYSTKEGDGEEEV 147
           EYL SF+   Y+ K G  EEEV
Sbjct: 106 EYLESFRPLLYAQKSGKPEEEV 127


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 190  TLKELRYSLAQDSFCSIPSLDRRVIH 267
            T++ L+YSLA      IPS++R VIH
Sbjct: 1203 TMQILKYSLANVVVKGIPSVNRCVIH 1228


>AF039042-6|AAC48244.1|  219|Caenorhabditis elegans Glutathione
           s-transferase protein21 protein.
          Length = 219

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 212 EYLSSFKVASYSTKEGDGEEEV 147
           EY +SF+   Y+T +G  EEEV
Sbjct: 106 EYNTSFRACMYATLQGKPEEEV 127


>AC119287-2|AAM19064.2|  218|Caenorhabditis elegans Glutathione
           s-transferase protein35 protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 212 EYLSSFKVASYSTKEGDGEEEV 147
           EY+ SF+   Y+ K G  EEEV
Sbjct: 106 EYIESFRPVLYAQKSGKPEEEV 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,374,443
Number of Sequences: 27780
Number of extensions: 132734
Number of successful extensions: 527
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)