Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1290X
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.37 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.9  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   7.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 220 QDSFCSIPSLDRRVIHPQ 273
           QD+FC+I S   + +HP+
Sbjct: 355 QDAFCNIVSCSPQTVHPE 372


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 360 SCLVKLAPFPPMPGRT 407
           SCL+   P PP+P  T
Sbjct: 433 SCLIHGPPLPPLPLHT 448


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 360 SCLVKLAPFPPMPGRT 407
           SCL+   P PP+P  T
Sbjct: 433 SCLIHGPPLPPLPLHT 448


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 194 KVASYSTKEGDGEEEVDTEIIKQEAENTD 108
           K+A ++TK+    EE+  + + Q ++N++
Sbjct: 602 KLALFATKDIKQNEEITFDYMCQSSKNSE 630


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 339 NRRISSNSCLVKLAPFPPMPGRTTK 413
           NRR    +CL KL    P+   T++
Sbjct: 59  NRRAHLRNCLEKLKVLVPLGPETSR 83


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  LSVFCLRNTSIVVVNLF 1
           + V C++ T  VVV+L+
Sbjct: 85  VGVHCMKTTQAVVVSLY 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,021
Number of Sequences: 438
Number of extensions: 1744
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)