Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1290X
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    37   0.005
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    32   0.15 
At2g32235.1 68415.m03939 expressed protein                             32   0.19 
At5g64910.1 68418.m08165 expressed protein  ; expression support...    29   1.0  
At2g12875.1 68415.m01402 hypothetical protein                          28   2.4  
At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TS...    28   3.2  
At3g47760.1 68416.m05203 ABC transporter family protein probable...    28   3.2  
At3g47750.1 68416.m05202 ABC transporter family protein probable...    27   4.2  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    27   4.2  
At4g24650.1 68417.m03529 adenylate isopentenyltransferase 4 / cy...    27   5.5  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    27   7.3  
At4g31590.1 68417.m04487 glycosyl transferase family 2 protein s...    26   9.7  
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    26   9.7  

>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILRXXXXXXXXXXXXXXEA---IHYDDRAVG 266
           K+KM+L HLVV      K  N  ++ELDDI+R                   IHYDD A+ 
Sbjct: 734 KKKMVLEHLVVGKL---KTQNINQEELDDIIRYGSKELFASEDDEAGKSGKIHYDDAAID 790

Query: 265 ELLD 254
           +LLD
Sbjct: 791 KLLD 794



 Score = 33.9 bits (74), Expect = 0.048
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -1

Query: 245  EGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEII----KQEAENTDPA-YWIKLLR 81
            E +   +   N +L +FKVA++   + +    ++ + +    K  A N+D A YW +LL+
Sbjct: 801  EEVSVDDEEENGFLKAFKVANFEYIDENEAAALEAQRVAAESKSSAGNSDRASYWEELLK 860

Query: 80   HHYEQHQVE 54
              +E HQ E
Sbjct: 861  DKFELHQAE 869


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
           strong similarity to chromatin remodeling factor CHD3
           (PICKLE) [Arabidopsis thaliana] GI:6478518; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 1202

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 436 KRKMMLTHLVVRPGMGGKGANFTKQELDDILRXXXXXXXXXXXXXXEA---IHYDDRAVG 266
           K KM+L HLVV     GK  +  + ELDDI++                   IHYDD A+ 
Sbjct: 663 KNKMLLEHLVV-----GK-QHLCQDELDDIIKYGSKELFSEENDEAGRSGKIHYDDAAIE 716

Query: 265 ELLD 254
           +LLD
Sbjct: 717 QLLD 720


>At2g32235.1 68415.m03939 expressed protein
          Length = 310

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 248 KEGIEQKESWANEYLS-SFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLR 81
           K+G+ + + W N+ L     V+S S K+ D  + VD E+++QE +  +    +K+ R
Sbjct: 224 KDGVRELDQWCNKLLKYGEAVSSGSVKQDDSPKAVD-EVVQQEEQPKECKEGVKVNR 279


>At5g64910.1 68418.m08165 expressed protein  ; expression supported
           by MPSS
          Length = 487

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 248 KEGIEQKESWANEYLSSFKVASYSTKEGDGEEEV--DTEIIKQEAENTD 108
           +EG  ++E+  N+   + KV S + +EG  EEE   D E  K+EA   D
Sbjct: 63  EEGKNEEEANENQEEEAAKVESKAAEEGGNEEEAKEDKEEEKEEAARED 111


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 245 EGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYW 96
           E +E+++S+ NE   S K     ++E + EEE   E  K+E +      W
Sbjct: 193 EAVEEEKSYKNEEEKSEKDEEEKSEEEESEEEEKEEEEKEEEKEEGNDCW 242


>At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TSB2)
           identical to SP|25269
          Length = 475

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 206 LSSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQVESSL 45
           LS  + A YS    +  +    EI+K       P Y+ + L  HY +   E  L
Sbjct: 102 LSELETAFYSLATDEDFQRELAEILKDYVGRESPLYFAERLTEHYRRENGEGPL 155


>At3g47760.1 68416.m05203 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 872

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 66  LFVVMPEKFDPVRRISILCFLFYNFCIDFLFTIAFL-SGITSNFERAKI 209
           LF+++  KF      SI  F+FY  CI+   +IAFL S   S  E A +
Sbjct: 354 LFLLVGLKFFRFNDYSIQ-FIFYFLCINLQISIAFLVSSAFSKIETASV 401


>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 66  LFVVMPEKFDPVRRISILCFLFYNFCIDFLFTIAFL-SGITSNFERAKI 209
           LF+++  KF      SI  F+FY  CI+   +IAFL S   S  E A +
Sbjct: 415 LFLLVGLKFFRFNDYSIQ-FIFYFLCINLQISIAFLVSSAFSKVETASV 462


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to SP|O14647
            Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
            sapiens}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00385: 'chromo' (CHRromatin
            Organization MOdifier)
          Length = 1722

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
 Frame = -2

Query: 436  KRKMMLTHLVVRP-GMGG--------KGANFTKQELDDILR 341
            KRKM+L HLV++     G        KG+NF K EL  ILR
Sbjct: 1076 KRKMVLDHLVIQKLNAEGRLEKRETKKGSNFDKNELSAILR 1116


>At4g24650.1 68417.m03529 adenylate isopentenyltransferase 4 /
           cytokinin synthase (IPT4) identical to adenylate
           isopentenyltransferase (IPT4) [Arabidopsis thaliana]
           GI:14279062
          Length = 318

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 203 SSFKVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQ 66
           +SF+ A  + KEG+G  E+  +I  +E    +P   +K++R H +Q
Sbjct: 258 ASFREAIRAAKEGEGVAEMQRKIWNKEV--LEPC--VKIVRSHLDQ 299


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 263 ITRRSKEGIEQKESWANEYLSSFKVASYSTKEGDGEEEVDTEIIKQEAEN 114
           +T +  E +E++ES   E     K      +  + EEE + E  K+E EN
Sbjct: 74  LTEQDPENVEEEESEEEEKEEEEKEEEEEEEGEEEEEEEEEEEEKEEEEN 123


>At4g31590.1 68417.m04487 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 692

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 185 SYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHH 75
           +YS  E DG +     + K   +N     W+ LL+ H
Sbjct: 29  NYSVVEIDGPDSAFRPVEKSRGKNAKQVTWVLLLKAH 65


>At1g27750.1 68414.m03391 ubiquitin system component Cue
            domain-containing protein very low similarity to ASC-1
            complex subunit P100 [Homo sapiens] GI:12061187; contains
            Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 351  SSNSCLVKLAPFPPMPGR 404
            SS+ CL+  APF P P R
Sbjct: 1056 SSSECLIVAAPFAPPPSR 1073


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,882,623
Number of Sequences: 28952
Number of extensions: 124086
Number of successful extensions: 440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)