Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1287
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.35 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   7.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 404 YGSVDRSSPPSLPSNKCGSRNKS--TTSLAPPLYTGSASKRTARR 276
           Y S++ ++PP  P  +  S  ++  T S  PPLY    +KR   R
Sbjct: 723 YLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKRCEER 767


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 374 SLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRC 273
           SL S    + NKS+TS  PP +  S SK     C
Sbjct: 56  SLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSIC 89


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 397 DPYGVLPLWRSNDLYLHCRWG----ESCDFLLHTVGDSRVHVVPP 519
           DP G +PL +S + Y  C+ G    + C  +L     S   VVPP
Sbjct: 159 DPNGNVPLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRCVVPP 203


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 371 LPSNKCGSRNKSTTSLAPPLYTGSA--SKRTA 282
           LP+++C SR  S + + P   +G +  S+R A
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGESMLSERAA 110


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 439  YLHCRWGE 462
            YLHC WG+
Sbjct: 1294 YLHCLWGK 1301


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 628 PRSWVWKLAASTRQHITPS*SATWTSV 548
           PRS++  L+ S R H+    SA  T++
Sbjct: 196 PRSYIPPLSTSMRSHLCNWGSANSTNI 222


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 628 PRSWVWKLAASTRQHITPS*SATWTSV 548
           PRS++  L+ S R H+    SA  T++
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTNI 382


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 628 PRSWVWKLAASTRQHITPS*SATWTSV 548
           PRS++  L+ S R H+    SA  T++
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTNI 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,198
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)