Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1285X
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   0.99 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   2.3  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    26   2.3  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   2.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   3.0  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    25   4.0  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   4.0  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   5.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    24   9.3  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    24   9.3  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 324 TLPGKYXTACRTKRPHSDPASLTASNRVSRTWTPASVS 437
           TLP    T  +T R  + P S   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 175 PPIITIYVINLYKKNTNKCT 116
           PP  T+YV+ + KKN  K T
Sbjct: 311 PPTETVYVVKMLKKNAAKFT 330


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 331 QGSXRQPVEQKDLIRIQPP*LHPIGCRELGLRRRYL 438
           Q +  + + QK L+ +QP  L P+G +E+ LR ++L
Sbjct: 143 QKNLTELIYQKFLLVVQPRHLIPVGDQEMQLRIKHL 178


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 286 LAETSLQF-LEGAASTIVAAFPSEPSFGLFSLFSFVAQPPIITIYVINLYKKNTNKCTIT 110
           LAE + Q  + G  +T++   P     GL+     + +   IT+++ +  + N     + 
Sbjct: 62  LAEAAKQIKMSGFKNTLIVTDPGIIKVGLYDKVKALLEEQSITVHLYDGVQPNPTVGNVN 121

Query: 109 R*LQQIKKGN 80
           + L+ +KK N
Sbjct: 122 QGLEIVKKEN 131


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 184 QKKIKKTNQKRARTEKPQQWSTPHPREIGGWFQ 282
           Q    + N+ R   E   +W  PHP + G  F+
Sbjct: 232 QASASENNKDRGEFEGKDEWLLPHPSKKGQTFE 264


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 259 EGAASTIVAAFPSEPSFGLFSLFSFVAQPPIIT 161
           EG   T+   FP +PS  +   FS  +  P+++
Sbjct: 146 EGGGRTLYLEFPEQPSMEVLKSFSVHSVVPVLS 178


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = +2

Query: 182 NKRK*RKQTKRGLGRKSRNNGRRRTLEKLEAGFSKLQGSDSKSLLKKYLTREVXDSL*NK 361
           NK + R++ +  L  + +N    RT++K  A   KLQ  D                +  K
Sbjct: 279 NKIRQRREEELRLLEQKKNEELLRTIDKAPAISKKLQQKDKAEKFSNKAVSSSTTEIKLK 338

Query: 362 KTSFGSSLL 388
           K  FG   L
Sbjct: 339 KKKFGKHRL 347


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 402 DWMQSRRLDPNEVFLFYRLSXTSLVRYFFSSDLESDPWSL 283
           DW  S  LDPN  ++   L     V Y +    E+  W L
Sbjct: 97  DWEHSLELDPNNTYIQKSLHRLKEVYYIYRECAET--WQL 134


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 435  IPTPESKFSTPDWMQSR 385
            I  P ++F  PDW+Q R
Sbjct: 1152 ISNPVTRFPLPDWLQKR 1168


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 182 CTATHYHNLRNK 147
           C+ T YHNL+NK
Sbjct: 200 CSQTWYHNLKNK 211


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 191 K*RKQTKRGLGRKSRNNGRRRTLEKLEAGFSKLQGSDSKS 310
           K  K+ ++G GR+S  + R +    +  GF  L  +D  S
Sbjct: 54  KRNKELRKGKGRRSSLDQRGKRASSIGTGFEALPHADVPS 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,586
Number of Sequences: 5004
Number of extensions: 34567
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)