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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1285X
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0431 - 8384259-8384266,8384649-8384787,8385875-8386067,838...    32   0.18 
09_04_0372 + 17026551-17026778,17027469-17027830,17027925-170279...    31   0.32 
01_06_0128 - 26727484-26728383                                         30   0.74 
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314           29   1.7  
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    29   2.3  
03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824     28   3.0  
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749...    28   3.9  
04_04_0184 - 23398023-23398385,23398512-23398517                       27   5.2  
03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045...    27   6.9  
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256...    27   9.1  

>03_02_0431 -
           8384259-8384266,8384649-8384787,8385875-8386067,
           8386180-8387702
          Length = 620

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 19/59 (32%), Positives = 35/59 (59%)
 Frame = +2

Query: 173 WLCNKRK*RKQTKRGLGRKSRNNGRRRTLEKLEAGFSKLQGSDSKSLLKKYLTREVXDS 349
           W   +R   +Q ++ L R++R N     +EKL +  S+L+  DS + +++YL RE+ +S
Sbjct: 519 WFRQRRAAAEQEQQRLWRQARMNV---DIEKLMSKLSELERIDSFNAIERYLLREMENS 574


>09_04_0372 +
           17026551-17026778,17027469-17027830,17027925-17027968,
           17028079-17028293,17028405-17028529,17028617-17028692
          Length = 349

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 256 GAASTIVAAFPSEPSFGLFSLFS 188
           G A  +VA  PSEP FG+  LFS
Sbjct: 21  GGAPAVVAGAPSEPPFGMIELFS 43


>01_06_0128 - 26727484-26728383
          Length = 299

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 162 VIMGGCATKENKENKPKEGSDGKAATMVDAAPSRNWRLVSASSRDP 299
           V+ GGC     +    K+G  G  +T       R W   +A  RDP
Sbjct: 76  VVGGGCTVGVGRRRLTKDGGPGAPSTKFRGVRRRPWGKFAAEIRDP 121


>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
          Length = 1056

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 340 YFPGKVLLQQRLRVGSLELAETSLQFLEGAASTIVAAFPSEPS 212
           Y PGK+ L QRL + +L++AE +L++L    S  +A    +PS
Sbjct: 824 YIPGKLSLMQRLNI-ALDVAE-ALEYLHHHISPSIAHCDIKPS 864


>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 432 PTPESKFSTPDWMQSRRL 379
           P PE+K  TPDW+QS +L
Sbjct: 117 PPPEAKKVTPDWLQSVQL 134


>03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824
          Length = 206

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 202 TNQKRARTEKPQQWSTPHPREIGGWFQ 282
           +N    + +KP++W+ P+P+   GW++
Sbjct: 168 SNPVDLKFDKPEKWTAPYPKYEYGWWE 194


>07_01_0893 +
           7484598-7484744,7484837-7484902,7494387-7494530,
           7494860-7495235,7495904-7496017,7496282-7496454,
           7496562-7496669,7497311-7497377,7497791-7497904,
           7498121-7498257,7498727-7498813,7498962-7498986,
           7499044-7499266,7499770-7499947,7500039-7500152,
           7500249-7500380,7500488-7500588,7500720-7500933
          Length = 839

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 278 FSKLQGSDSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCI 397
           F K    D  S + K+ TRE+ D+   K     + +LDC+
Sbjct: 115 FGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDCV 154


>04_04_0184 - 23398023-23398385,23398512-23398517
          Length = 122

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 172 VAVQQKKIKKTNQKRARTEKPQQWSTPHP 258
           V V++ K KK  +K+   +KP+    PHP
Sbjct: 69  VQVEEVKEKKPEEKKPEEKKPEPCYCPHP 97


>03_02_0766 -
           11003746-11003902,11004037-11004281,11004379-11004585,
           11004699-11004861,11005105-11005370
          Length = 345

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 6   PSSRSALLYIHFDKIAFHHCI*YLP 80
           P  R+    +  DKIAF+HC  Y P
Sbjct: 154 PEVRTVAAMVGGDKIAFYHCAFYSP 178


>06_03_0497 +
           21424732-21424899,21424992-21425057,21425176-21425634,
           21425945-21426088,21426172-21426306,21426418-21426808,
           21427256-21427428,21427508-21427615,21427715-21427810,
           21427896-21428003,21428644-21428792,21428924-21428925,
           21429071-21429207,21429538-21429842,21430922-21431099,
           21431192-21431305,21431373-21431504,21431610-21431843
          Length = 1032

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 299 DSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCI 397
           D  S   K+ TRE  D+   K T   + +LDC+
Sbjct: 327 DDISTACKWFTREHSDTTYEKNTQLAAKVLDCV 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,387
Number of Sequences: 37544
Number of extensions: 235974
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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