BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1285X (447 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0431 - 8384259-8384266,8384649-8384787,8385875-8386067,838... 32 0.18 09_04_0372 + 17026551-17026778,17027469-17027830,17027925-170279... 31 0.32 01_06_0128 - 26727484-26728383 30 0.74 10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 29 1.7 02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 29 2.3 03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824 28 3.0 07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 3.9 04_04_0184 - 23398023-23398385,23398512-23398517 27 5.2 03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045... 27 6.9 06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 27 9.1 >03_02_0431 - 8384259-8384266,8384649-8384787,8385875-8386067, 8386180-8387702 Length = 620 Score = 32.3 bits (70), Expect = 0.18 Identities = 19/59 (32%), Positives = 35/59 (59%) Frame = +2 Query: 173 WLCNKRK*RKQTKRGLGRKSRNNGRRRTLEKLEAGFSKLQGSDSKSLLKKYLTREVXDS 349 W +R +Q ++ L R++R N +EKL + S+L+ DS + +++YL RE+ +S Sbjct: 519 WFRQRRAAAEQEQQRLWRQARMNV---DIEKLMSKLSELERIDSFNAIERYLLREMENS 574 >09_04_0372 + 17026551-17026778,17027469-17027830,17027925-17027968, 17028079-17028293,17028405-17028529,17028617-17028692 Length = 349 Score = 31.5 bits (68), Expect = 0.32 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 256 GAASTIVAAFPSEPSFGLFSLFS 188 G A +VA PSEP FG+ LFS Sbjct: 21 GGAPAVVAGAPSEPPFGMIELFS 43 >01_06_0128 - 26727484-26728383 Length = 299 Score = 30.3 bits (65), Expect = 0.74 Identities = 14/46 (30%), Positives = 19/46 (41%) Frame = +3 Query: 162 VIMGGCATKENKENKPKEGSDGKAATMVDAAPSRNWRLVSASSRDP 299 V+ GGC + K+G G +T R W +A RDP Sbjct: 76 VVGGGCTVGVGRRRLTKDGGPGAPSTKFRGVRRRPWGKFAAEIRDP 121 >10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 Length = 1056 Score = 29.1 bits (62), Expect = 1.7 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = -3 Query: 340 YFPGKVLLQQRLRVGSLELAETSLQFLEGAASTIVAAFPSEPS 212 Y PGK+ L QRL + +L++AE +L++L S +A +PS Sbjct: 824 YIPGKLSLMQRLNI-ALDVAE-ALEYLHHHISPSIAHCDIKPS 864 >02_02_0704 + 13095449-13095584,13095671-13095990,13096102-13096423, 13096556-13096632,13096744-13097127 Length = 412 Score = 28.7 bits (61), Expect = 2.3 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 432 PTPESKFSTPDWMQSRRL 379 P PE+K TPDW+QS +L Sbjct: 117 PPPEAKKVTPDWLQSVQL 134 >03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824 Length = 206 Score = 28.3 bits (60), Expect = 3.0 Identities = 8/27 (29%), Positives = 18/27 (66%) Frame = +1 Query: 202 TNQKRARTEKPQQWSTPHPREIGGWFQ 282 +N + +KP++W+ P+P+ GW++ Sbjct: 168 SNPVDLKFDKPEKWTAPYPKYEYGWWE 194 >07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530, 7494860-7495235,7495904-7496017,7496282-7496454, 7496562-7496669,7497311-7497377,7497791-7497904, 7498121-7498257,7498727-7498813,7498962-7498986, 7499044-7499266,7499770-7499947,7500039-7500152, 7500249-7500380,7500488-7500588,7500720-7500933 Length = 839 Score = 27.9 bits (59), Expect = 3.9 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +2 Query: 278 FSKLQGSDSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCI 397 F K D S + K+ TRE+ D+ K + +LDC+ Sbjct: 115 FGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDCV 154 >04_04_0184 - 23398023-23398385,23398512-23398517 Length = 122 Score = 27.5 bits (58), Expect = 5.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +1 Query: 172 VAVQQKKIKKTNQKRARTEKPQQWSTPHP 258 V V++ K KK +K+ +KP+ PHP Sbjct: 69 VQVEEVKEKKPEEKKPEEKKPEPCYCPHP 97 >03_02_0766 - 11003746-11003902,11004037-11004281,11004379-11004585, 11004699-11004861,11005105-11005370 Length = 345 Score = 27.1 bits (57), Expect = 6.9 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +3 Query: 6 PSSRSALLYIHFDKIAFHHCI*YLP 80 P R+ + DKIAF+HC Y P Sbjct: 154 PEVRTVAAMVGGDKIAFYHCAFYSP 178 >06_03_0497 + 21424732-21424899,21424992-21425057,21425176-21425634, 21425945-21426088,21426172-21426306,21426418-21426808, 21427256-21427428,21427508-21427615,21427715-21427810, 21427896-21428003,21428644-21428792,21428924-21428925, 21429071-21429207,21429538-21429842,21430922-21431099, 21431192-21431305,21431373-21431504,21431610-21431843 Length = 1032 Score = 26.6 bits (56), Expect = 9.1 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 299 DSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCI 397 D S K+ TRE D+ K T + +LDC+ Sbjct: 327 DDISTACKWFTREHSDTTYEKNTQLAAKVLDCV 359 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,093,387 Number of Sequences: 37544 Number of extensions: 235974 Number of successful extensions: 733 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 731 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 859680288 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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