Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1285X
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0431 - 8384259-8384266,8384649-8384787,8385875-8386067,838... 32 0.18
09_04_0372 + 17026551-17026778,17027469-17027830,17027925-170279... 31 0.32
01_06_0128 - 26727484-26728383 30 0.74
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 29 1.7
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 29 2.3
03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824 28 3.0
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 3.9
04_04_0184 - 23398023-23398385,23398512-23398517 27 5.2
03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045... 27 6.9
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 27 9.1
>03_02_0431 -
8384259-8384266,8384649-8384787,8385875-8386067,
8386180-8387702
Length = 620
Score = 32.3 bits (70), Expect = 0.18
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +2
Query: 173 WLCNKRK*RKQTKRGLGRKSRNNGRRRTLEKLEAGFSKLQGSDSKSLLKKYLTREVXDS 349
W +R +Q ++ L R++R N +EKL + S+L+ DS + +++YL RE+ +S
Sbjct: 519 WFRQRRAAAEQEQQRLWRQARMNV---DIEKLMSKLSELERIDSFNAIERYLLREMENS 574
>09_04_0372 +
17026551-17026778,17027469-17027830,17027925-17027968,
17028079-17028293,17028405-17028529,17028617-17028692
Length = 349
Score = 31.5 bits (68), Expect = 0.32
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 256 GAASTIVAAFPSEPSFGLFSLFS 188
G A +VA PSEP FG+ LFS
Sbjct: 21 GGAPAVVAGAPSEPPFGMIELFS 43
>01_06_0128 - 26727484-26728383
Length = 299
Score = 30.3 bits (65), Expect = 0.74
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 162 VIMGGCATKENKENKPKEGSDGKAATMVDAAPSRNWRLVSASSRDP 299
V+ GGC + K+G G +T R W +A RDP
Sbjct: 76 VVGGGCTVGVGRRRLTKDGGPGAPSTKFRGVRRRPWGKFAAEIRDP 121
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 340 YFPGKVLLQQRLRVGSLELAETSLQFLEGAASTIVAAFPSEPS 212
Y PGK+ L QRL + +L++AE +L++L S +A +PS
Sbjct: 824 YIPGKLSLMQRLNI-ALDVAE-ALEYLHHHISPSIAHCDIKPS 864
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 432 PTPESKFSTPDWMQSRRL 379
P PE+K TPDW+QS +L
Sbjct: 117 PPPEAKKVTPDWLQSVQL 134
>03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824
Length = 206
Score = 28.3 bits (60), Expect = 3.0
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 202 TNQKRARTEKPQQWSTPHPREIGGWFQ 282
+N + +KP++W+ P+P+ GW++
Sbjct: 168 SNPVDLKFDKPEKWTAPYPKYEYGWWE 194
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 278 FSKLQGSDSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCI 397
F K D S + K+ TRE+ D+ K + +LDC+
Sbjct: 115 FGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDCV 154
>04_04_0184 - 23398023-23398385,23398512-23398517
Length = 122
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 172 VAVQQKKIKKTNQKRARTEKPQQWSTPHP 258
V V++ K KK +K+ +KP+ PHP
Sbjct: 69 VQVEEVKEKKPEEKKPEEKKPEPCYCPHP 97
>03_02_0766 -
11003746-11003902,11004037-11004281,11004379-11004585,
11004699-11004861,11005105-11005370
Length = 345
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 6 PSSRSALLYIHFDKIAFHHCI*YLP 80
P R+ + DKIAF+HC Y P
Sbjct: 154 PEVRTVAAMVGGDKIAFYHCAFYSP 178
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 299 DSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCI 397
D S K+ TRE D+ K T + +LDC+
Sbjct: 327 DDISTACKWFTREHSDTTYEKNTQLAAKVLDCV 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,387
Number of Sequences: 37544
Number of extensions: 235974
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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