Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1285X
         (447 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB038783-1|BAB12117.1|  878|Homo sapiens intestinal mucin protein.     29   5.5  
AB038781-1|BAB12115.1|  878|Homo sapiens intestinal mucin protein.     29   5.5  
X16983-1|CAA34852.1| 1038|Homo sapiens integrin alpha-4 subunit ...    29   9.5  
L12002-1|AAB59613.1| 1038|Homo sapiens integrin alpha 4 subunit ...    29   9.5  
BC115361-1|AAI15362.1|  147|Homo sapiens hypothetical protein LO...    29   9.5  
BC104205-1|AAI04206.1|  147|Homo sapiens hypothetical protein LO...    29   9.5  
BC055419-1|AAH55419.1|  195|Homo sapiens ITGA4 protein protein.        29   9.5  
BC016671-1|AAH16671.1|  617|Homo sapiens ITGA4 protein protein.        29   9.5  
AY358415-1|AAQ88781.1|  596|Homo sapiens KMQK697 protein.              29   9.5  
AL773541-7|CAI18456.1|  626|Homo sapiens chromosome 6 open readi...    29   9.5  

>AB038783-1|BAB12117.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 321 STLPGKYXTACRTKRPHSDPASLTASNRVSRTWTPASVSTRR 446
           S+LP    T+ ++  P S P + T+   V+ T TP +++TRR
Sbjct: 452 SSLPTILRTSSKSTHP-SPPTARTSETSVATTQTPTTLTTRR 492


>AB038781-1|BAB12115.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 321 STLPGKYXTACRTKRPHSDPASLTASNRVSRTWTPASVSTRR 446
           S+LP    T+ ++  P S P + T+   V+ T TP +++TRR
Sbjct: 452 SSLPTILRTSSKSTHP-SPPTARTSETSVATTQTPTTLTTRR 492


>X16983-1|CAA34852.1| 1038|Homo sapiens integrin alpha-4 subunit
           preprotein protein.
          Length = 1038

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 SDGKAATMVDAAPSRNWRLVSASSRDP-TLSRC*RSTLPGKYXTACRTKRPHSDPASLTA 395
           S G    ++  AP+ NW L +AS  +P  + RC     PG+     +   P+ +P   T 
Sbjct: 66  SHGANRWLLVGAPTANW-LANASVINPGAIYRCRIGKNPGQTCEQLQLGSPNGEPCGKTC 124

Query: 396 SNRVSRTWTPASVS 437
                  W   ++S
Sbjct: 125 LEERDNQWLGVTLS 138


>L12002-1|AAB59613.1| 1038|Homo sapiens integrin alpha 4 subunit
           protein.
          Length = 1038

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 SDGKAATMVDAAPSRNWRLVSASSRDP-TLSRC*RSTLPGKYXTACRTKRPHSDPASLTA 395
           S G    ++  AP+ NW L +AS  +P  + RC     PG+     +   P+ +P   T 
Sbjct: 66  SHGANRWLLVGAPTANW-LANASVINPGAIYRCRIGKNPGQTCEQLQLGSPNGEPCGKTC 124

Query: 396 SNRVSRTWTPASVS 437
                  W   ++S
Sbjct: 125 LEERDNQWLGVTLS 138


>BC115361-1|AAI15362.1|  147|Homo sapiens hypothetical protein
           LOC134121 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 432 PTPESKFSTPDWMQSRRLDPNEVFLFYRLSXTSLVRYF 319
           P P S  S   ++  RRLDP E   +YR + T ++  +
Sbjct: 19  PPPVSAQSAFSYIPPRRLDPKEHSYYYRPARTGIISLY 56


>BC104205-1|AAI04206.1|  147|Homo sapiens hypothetical protein
           LOC134121 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 432 PTPESKFSTPDWMQSRRLDPNEVFLFYRLSXTSLVRYF 319
           P P S  S   ++  RRLDP E   +YR + T ++  +
Sbjct: 19  PPPVSAQSAFSYIPPRRLDPKEHSYYYRPARTGIISLY 56


>BC055419-1|AAH55419.1|  195|Homo sapiens ITGA4 protein protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 SDGKAATMVDAAPSRNWRLVSASSRDP-TLSRC*RSTLPGKYXTACRTKRPHSDPASLTA 395
           S G    ++  AP+ NW L +AS  +P  + RC     PG+     +   P+ +P   T 
Sbjct: 60  SHGANRWLLVGAPTANW-LANASVINPGAIYRCRIGKNPGQTCEQLQLGSPNGEPCGKTC 118

Query: 396 SNRVSRTWTPASVS 437
                  W   ++S
Sbjct: 119 LEERDNQWLGVTLS 132


>BC016671-1|AAH16671.1|  617|Homo sapiens ITGA4 protein protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 SDGKAATMVDAAPSRNWRLVSASSRDP-TLSRC*RSTLPGKYXTACRTKRPHSDPASLTA 395
           S G    ++  AP+ NW L +AS  +P  + RC     PG+     +   P+ +P   T 
Sbjct: 60  SHGANRWLLVGAPTANW-LANASVINPGAIYRCRIGKNPGQTCEQLQLGSPNGEPCGKTC 118

Query: 396 SNRVSRTWTPASVS 437
                  W   ++S
Sbjct: 119 LEERDNQWLGVTLS 132


>AY358415-1|AAQ88781.1|  596|Homo sapiens KMQK697 protein.
          Length = 596

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
 Frame = +3

Query: 174 GCATKENKENK-PKEGSD-----GKAATMVDAAPSRNWRLVSASSRDPTLSRC*RSTLPG 335
           G +T  N E+  P  G+      G + T   A+ + N    + SSR  T +    STL  
Sbjct: 116 GASTATNSESSTPSSGASTVTNSGSSVTSSGASTATNSESSTVSSRASTATNSESSTLSS 175

Query: 336 KYXTACRTKRPHSDPASLTASNRVSRTWTPASVST 440
              TA  +    +   + TA+N  S T T +  ST
Sbjct: 176 GASTATNSDSSTTSSGASTATNSESST-TSSGAST 209


>AL773541-7|CAI18456.1|  626|Homo sapiens chromosome 6 open reading
           frame 205 protein.
          Length = 626

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
 Frame = +3

Query: 174 GCATKENKENK-PKEGSD-----GKAATMVDAAPSRNWRLVSASSRDPTLSRC*RSTLPG 335
           G +T  N E+  P  G+      G + T   A+ + N    + SSR  T +    STL  
Sbjct: 116 GASTATNSESSTPSSGASTVTNSGSSVTSSGASTATNSESSTVSSRASTATNSESSTLSS 175

Query: 336 KYXTACRTKRPHSDPASLTASNRVSRTWTPASVST 440
              TA  +    +   + TA+N  S T T +  ST
Sbjct: 176 GASTATNSDSSTTSSGASTATNSESST-TSSGAST 209


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,995,231
Number of Sequences: 237096
Number of extensions: 1243352
Number of successful extensions: 3570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3570
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)