Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1285X
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-2|AAO21426.1|  359|Caenorhabditis elegans Hypothetical pr...    83   9e-17
U41543-1|AAB37022.2|  396|Caenorhabditis elegans Hypothetical pr...    83   9e-17
AF003148-10|AAB54206.2|  427|Caenorhabditis elegans Hypothetical...    77   4e-15
AF043703-6|AAK21503.1|  399|Caenorhabditis elegans Hypothetical ...    77   8e-15
Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical pr...    73   7e-14
Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical pr...    63   1e-10
AF106575-6|AAC78175.2|  244|Caenorhabditis elegans Hypothetical ...    51   4e-07
U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   3.6  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    27   4.7  
AC024811-6|AAP68913.1|   90|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U41543-2|AAO21426.1|  359|Caenorhabditis elegans Hypothetical
           protein F46H5.3b protein.
          Length = 359

 Score = 83.0 bits (196), Expect = 9e-17
 Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
 Frame = +2

Query: 257 LEKLEAGFSKLQGS-DSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCIQSGVENLDSGVG 433
           + K+E G++KLQ + +  SLLKKYLT+EV D L +KKT  G++LLD IQSGV NLDSGVG
Sbjct: 8   IAKIEEGYAKLQAAPECHSLLKKYLTKEVVDQLKDKKTKLGANLLDVIQSGVANLDSGVG 67

Query: 434 IYAP 445
           +YAP
Sbjct: 68  VYAP 71


>U41543-1|AAB37022.2|  396|Caenorhabditis elegans Hypothetical
           protein F46H5.3a protein.
          Length = 396

 Score = 83.0 bits (196), Expect = 9e-17
 Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
 Frame = +2

Query: 257 LEKLEAGFSKLQGS-DSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCIQSGVENLDSGVG 433
           + K+E G++KLQ + +  SLLKKYLT+EV D L +KKT  G++LLD IQSGV NLDSGVG
Sbjct: 45  IAKIEEGYAKLQAAPECHSLLKKYLTKEVVDQLKDKKTKLGANLLDVIQSGVANLDSGVG 104

Query: 434 IYAP 445
           +YAP
Sbjct: 105 VYAP 108


>AF003148-10|AAB54206.2|  427|Caenorhabditis elegans Hypothetical
           protein F32B5.1 protein.
          Length = 427

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
 Frame = +2

Query: 254 TLEKLEAGFSKLQGSDS---KSLLKKYLTREVXDSL*NKKTSFGSSLLDCIQSGVENLDS 424
           T++K+E  ++KL G +    KSLLKK+LT+EV + L  K+T  G++L DCI+SGV NLD+
Sbjct: 73  TIKKIEEAYAKLNGPEGAKCKSLLKKHLTKEVVEKLKTKRTKVGATLYDCIRSGVYNLDA 132

Query: 425 GVGIYAP 445
           GVG+YAP
Sbjct: 133 GVGVYAP 139


>AF043703-6|AAK21503.1|  399|Caenorhabditis elegans Hypothetical
           protein W10C8.5 protein.
          Length = 399

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 35/67 (52%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
 Frame = +2

Query: 254 TLEKLEAGFSKLQGSDS---KSLLKKYLTREVXDSL*NKKTSFGSSLLDCIQSGVENLDS 424
           T++K+E  ++KL G +    KSLLKK+LT++V + L  K+T  G++L DCI+SGV NLD+
Sbjct: 45  TIKKIEEAYAKLNGPEGAKCKSLLKKHLTKDVVEKLKTKRTKLGATLYDCIRSGVYNLDA 104

Query: 425 GVGIYAP 445
           GVG+YAP
Sbjct: 105 GVGVYAP 111


>Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical
           protein ZC434.8 protein.
          Length = 360

 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
 Frame = +2

Query: 260 EKLEAGFSKLQG-SDSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCIQSGVENLDSGVGI 436
           + +E  ++KLQG SD  SLLKK+LT++V     +KKT  G++LLD IQSG ENLDSGVGI
Sbjct: 9   KSIEEVYTKLQGASDCSSLLKKHLTKDVVAKNKSKKTRLGATLLDVIQSGGENLDSGVGI 68

Query: 437 YAP 445
           YAP
Sbjct: 69  YAP 71


>Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical
           protein F44G3.2 protein.
          Length = 372

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
 Frame = +2

Query: 221 GRKSRNNGRRRTLEKLEAGFSKLQGSDS---KSLLKKYLTREVXDSL*NKKTSFGSSLLD 391
           G K   +    T++K+E  +  L G D     SLLKK LT++V + L  K T  G++L D
Sbjct: 7   GSKQHEDVDPVTIKKIEEAYVMLNGPDGAKCSSLLKKNLTKDVIEKLKTKSTKLGANLYD 66

Query: 392 CIQSGVENLDSGVGIYAP 445
           CI+SGV  LD+ VG+YAP
Sbjct: 67  CIRSGVYCLDALVGVYAP 84


>AF106575-6|AAC78175.2|  244|Caenorhabditis elegans Hypothetical
           protein K04F1.1 protein.
          Length = 244

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
 Frame = +2

Query: 254 TLEKLEAGFSKLQGSDS---KSLLKKYLTREVXDSL*NKKTSFGSSLLDCIQSGVENLDS 424
           T++K+E  + KL G +    KSLL+KYLT+++ + L  K T  G+S+ DCI +G+  +  
Sbjct: 95  TIKKIEEAYVKLNGPEGAKCKSLLRKYLTKDIVEKLKTKCTKLGASVYDCILTGLRFVRQ 154

Query: 425 GVGIYA 442
           G+   A
Sbjct: 155 GLRFVA 160


>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 193 IKKTNQKRARTEKPQ---QWSTPHPREIGGW 276
           + + ++++A+ E PQ   QWS P+ +++ GW
Sbjct: 540 LHRWSKQKAKQEAPQPEEQWSRPYAKDLRGW 570


>U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical
           protein T19D12.9 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 283 AETSLQFLEGAASTIVAAFPSEP---SFGLFSLFSFVAQPPIITIYVINL 143
           A+ S  F  GAA  I+  FPS P    FG+ ++ SF      ++  +I L
Sbjct: 69  ADVSFIFSAGAAGAIIGLFPSVPLTTKFGVRNVLSFYGLLTAVSTLLIPL 118


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 265 FLEGAASTIVAAFPSEPSFGLFSLFSFVAQPPIITIYVIN-LYKKNTNK 122
           F  GAA   +  F  +  +G F L SF+   P++  Y+I  +  KN  K
Sbjct: 159 FFSGAAGFGLDRFTVKLKYGGFKLGSFILLGPLVMSYLITYIVSKNERK 207


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 QQKKIKKTNQKRARTEKPQQWSTPHP 258
           + +K K  N K+A TEKP+   TP P
Sbjct: 847 KDEKPKDVNVKKAETEKPKTEVTPKP 872


>AC024811-6|AAP68913.1|   90|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.1 protein.
          Length = 90

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 323 TSSAAT*SRIPGAC*NQPPISRGCGVDH 240
           TS     SRIPG C + PP S G   +H
Sbjct: 47  TSPRRRASRIPGLCEHCPPASSGTARNH 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,247
Number of Sequences: 27780
Number of extensions: 200134
Number of successful extensions: 751
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)