Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1285X
         (447 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29750.1 68416.m03756 hypothetical protein                          29   1.1  
At5g56110.1 68418.m07000 myb family transcription factor contain...    28   2.5  
At5g15820.1 68418.m01851 zinc finger (C3HC4-type RING finger) fa...    28   2.5  
At3g11000.1 68416.m01328 expressed protein                             28   3.3  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    27   4.4  
At3g02400.1 68416.m00227 forkhead-associated domain-containing p...    27   7.6  
At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.6  

>At3g29750.1 68416.m03756 hypothetical protein
          Length = 421

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +3

Query: 165 IMGGCATKENKENKPKEGSDGKAATMVDAAPSRNWRLVSASSRDPTLSRC 314
           I GG  TKEN + K   G  G   + V A  +RN  + + S +D T S C
Sbjct: 305 IQGGHDTKENDDEKSFFGQPGVKHSEVVAGSTRN--MSTKSEKDQTRSVC 352


>At5g56110.1 68418.m07000 myb family transcription factor contains
           PFAM profile: Myb DNA binding domain PF00249
          Length = 320

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 177 CATKEN-KENKPKEGSDGKAATMVDAAPSRNWRLVSASSRDPTLSRC*RS 323
           C  KEN K  +     D K A+ +    +RNWRL+    ++  L RC +S
Sbjct: 6   CCEKENVKRGQWTPEEDNKLASYIAQHGTRNWRLI---PKNAGLQRCGKS 52


>At5g15820.1 68418.m01851 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 348

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 174 GCATKENKENKPKEGSDGKAATMVDAAPSRN 266
           GC+   N E + +EG DG ++T V+ + S N
Sbjct: 8   GCSINVNVEAEEEEGGDGGSSTNVEVSRSGN 38


>At3g11000.1 68416.m01328 expressed protein
          Length = 488

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +3

Query: 189 ENKENKPKEGSDGKAATMVDAAPSRNWRLVS--ASSR--DPTLSRC*RSTLPG-KYXTAC 353
           +NKE   KEG+ G  + +V+   ++ W   S  A  R   P++S+   S      + TA 
Sbjct: 194 KNKEKDSKEGALGAGSRLVNLGKTKEWETASNNADERRTQPSVSQSGTSYSSALSHMTAS 253

Query: 354 RT---KRPHSDPASLTASNRVSRTWTPAS 431
            T   K   ++  S  A   V   WT A+
Sbjct: 254 STQEKKNSITNEGSSQACKGVENPWTSAA 282


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 290 QGSDSKSLLKKYLTREVXDSL*NKKTSFGSSLLDCIQSGVENLDSGVGI 436
           +GSD  SL    ++    D+   K T+FGSS LD ++  +   DSG+ +
Sbjct: 263 KGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLH--DSGMPV 309


>At3g02400.1 68416.m00227 forkhead-associated domain-containing
           protein / FHA domain-containing protein / AT hook
           motif-containing protein contains Pfam profiles PF00498:
           FHA domain, PF02178: AT hook motif
          Length = 585

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 165 IMGGCATKENKENKPKEGSDGKAATMVD 248
           ++  C  +E+KEN+ +EG  G++  + D
Sbjct: 353 VLKNCHVEEDKENEAQEGCSGRSDDICD 380


>At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 480

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 331 GKVLLQQRLRVGSLELAETSLQFLEGAASTIVAAFPSEPSFGLFSLFSFVAQPPI 167
           GK LL    R+  + +   +L +   A +++ +   SEP   + SL      PPI
Sbjct: 24  GKRLLNLDRRISMITILSMNLPYAPHADASLASLTASEPGIRIISLPEIHDPPPI 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,600,494
Number of Sequences: 28952
Number of extensions: 185728
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)