Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1284
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AC087794-8|AAG53698.1|  214|Caenorhabditis elegans Hypothetical ...    28   9.6  

>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 591 AFCLLGFRIIIHDSH*YFHLF 653
           AF L+  ++ IHD+H YFH +
Sbjct: 104 AFFLVSNQVFIHDAHQYFHQY 124


>AC087794-8|AAG53698.1|  214|Caenorhabditis elegans Hypothetical
           protein Y32G9A.10 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 649 FSNDLE*SCKQ*APPNC*CFFSLDLWTSSQPTWCKMVTEPIDIY 780
           FSN  E +CK+  PP   C  ++  ++S  P + K+V EP D Y
Sbjct: 70  FSNKFEQNCKKRVPPRK-CQATVTPFSSRDPKFPKLV-EPSDDY 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,658,895
Number of Sequences: 27780
Number of extensions: 391939
Number of successful extensions: 606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)