Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1283
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 1.0
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 27 3.1
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 27 3.1
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 5.4
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 26 5.4
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 5.4
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 26 7.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.4
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 9.4
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 9.4
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 737 LPDTVDEMSTSTHVSAYFRTKEKDG 663
LPD V+ +ST+ H AY E+DG
Sbjct: 671 LPDLVNRLSTTGHFLAYTANLERDG 695
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 779 SWSDVCRWSTLQPRLPDTVDEMSTSTHVS 693
+W D WS ++ RL +++ S+H+S
Sbjct: 249 TWFDCIDWSVIEERLTNSLANSEQSSHIS 277
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -2
Query: 308 IGDSSEPGQDP---ARVSIDKW-LPTTAGTKSSLTGNSTEPRDKLISSQS 171
I ++ +P ++P I+ W T + S++ GN++ P++ +ISSQ+
Sbjct: 293 INNTLKPFEEPIAEGNADIEDWTFETVKKSDSTVLGNTSIPKNSIISSQN 342
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 244 QPLVPSHR*QVTPQNPGIN*SPRSLALKSTGSMAVDMPRWLAEV 113
Q PS R +V PQ PG++ +P SL + ++ +EV
Sbjct: 109 QMSTPSRRREVDPQRPGVS-TPSSLLFSGSDALTFSQAHPSSEV 151
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 280 SWPGSELSPMSITTYGYPF 336
SW G ELSP T Y YP+
Sbjct: 208 SWAG-ELSPEDFTEYAYPY 225
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 585 EYYDFKTY-RFGSPQHGSLRVAEVQNEAILFLCSEV 689
+ Y+ KTY SP+ +L +++ + E ++FLC ++
Sbjct: 96 QQYERKTYITDASPESQNLFLSKSKEEGVIFLCIQI 131
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 189 IDLLAVWPSRVQVRWPWICHDG 124
+DLL PS Q W WI H G
Sbjct: 283 LDLLLHPPSSAQKNWSWIKHVG 304
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -1
Query: 543 SIQ*TYNALMSTALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISN 385
SI TY+A S+A IT + T+ +T TS TLT+ T T SN
Sbjct: 146 SIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSN 198
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Frame = -1
Query: 480 HTNSHSLRNTRTS*KHT-----LTHVTHSQHFNTISNISH---YRFLGRLHGDRHSERIP 325
+TNS+++ ++R S KHT H + N+++++ H F+ G + +E IP
Sbjct: 228 YTNSNTVTSSRISLKHTDPTKWQKHAKRTASSNSLTDLLHASNQTFMAPASGLQSTEEIP 287
Query: 324 VCS-DGH-RGQ 298
S GH RG+
Sbjct: 288 QFSKTGHSRGR 298
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +3
Query: 309 VHHYIRVSV--LNADHHVVVLKN 371
VHH +R+S+ LN D HV L+N
Sbjct: 292 VHHKLRLSISLLNPDGHVSELRN 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,554,676
Number of Sequences: 5004
Number of extensions: 80491
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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