Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1283
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498...    33   0.35 
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760...    30   1.8  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    29   4.3  
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611...    29   5.6  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    28   9.8  

>01_06_1252 -
           35748000-35748173,35748243-35748375,35749771-35749847,
           35750465-35750509,35750584-35750679,35751125-35751130,
           35751259-35751388,35751510-35751706
          Length = 285

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 281 DPARVSIDKWLPTTAGTK-SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLT 105
           DP ++ + K+      +K SS  G+ +  +D  I   SG       G   A   G GY+ 
Sbjct: 98  DPLKIYLHKYREMEGDSKLSSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQ 156

Query: 104 PQSN-QVLLFFRTYA 63
           PQSN  +L+  +++A
Sbjct: 157 PQSNFHILVVLQSFA 171


>07_03_1177 -
           24574682-24574852,24575047-24575618,24575711-24576068,
           24576108-24576152
          Length = 381

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
 Frame = -2

Query: 302 DSSEPGQDPARV-SIDKWLPTTAGTKSSLTGNSTEPRDKLISSQS--GPQEYRFDGRGYA 132
           D S  G + +R+ + D+++ T AG  S + G   E ++ +  ++        +F+ +  A
Sbjct: 155 DRSYNGGESSRIITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVA 214

Query: 131 TMAGRGY----LTPQSNQVLLFFRTYAPNGLIY 45
            +  RGY    ++P      +F +++AP  L+Y
Sbjct: 215 ALKRRGYGGRYMSPAWAARPVFIQSFAPTSLVY 247


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 263 WRPSPDPGQVRSCPRCPSLHTG 328
           WR SP    ++ CP C   HTG
Sbjct: 414 WRESPASRAMQKCPACKRTHTG 435


>05_05_0036 -
           21758409-21758531,21758891-21759206,21759964-21761121,
           21761236-21761333
          Length = 564

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 153 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 58
           VR+ W+C+D   RL D S+ S  S    ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -1

Query: 180 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 46
           LAV PS      PW CH    R+ +A   +S    P  R E   +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,083,456
Number of Sequences: 37544
Number of extensions: 570519
Number of successful extensions: 1711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)