Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1283
(795 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.087
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 35 0.087
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.35
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7) 31 0.81
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 31 1.4
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.4
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 30 2.5
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) 30 2.5
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 4.3
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 29 4.3
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76) 29 4.3
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 29 4.3
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 28 7.6
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40) 28 7.6
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 7.6
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 34.7 bits (76), Expect = 0.087
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = -1
Query: 528 YNALMSTALNITGTI*HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHY 373
Y AL+ L T HTN +H T TS +H T T TH +H TIS HY
Sbjct: 126 YQALVIRQLVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHY 185
Query: 372 RFLGRLHGDRHSERIPVCSDGHRGQLRT 289
+H E I S H + T
Sbjct: 186 NITNT--SLQHHEHITTISRTHHEHITT 211
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -1
Query: 489 TI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCS 316
TI T+ +++ NT +T + TH +H TIS HY +H E I S
Sbjct: 178 TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTIS 235
Query: 315 DGHRGQLRT 289
H + T
Sbjct: 236 RTHHEHITT 244
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 34.7 bits (76), Expect = 0.087
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = -1
Query: 528 YNALMSTALNITGTI*HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHY 373
Y AL+ L T HTN +H T TS +H T T TH +H TIS HY
Sbjct: 59 YQALVIRQLVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHY 118
Query: 372 RFLGRLHGDRHSERIPVCSDGHRGQLRT 289
+H E I S H + T
Sbjct: 119 NITNT--SLQHHEHITTISRTHHEHITT 144
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -1
Query: 489 TI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCS 316
TI T+ +++ NT +T + TH +H TIS HY +H E I S
Sbjct: 111 TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTIS 168
Query: 315 DGHRGQLRT 289
H + T
Sbjct: 169 RTHHEHITT 177
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 191 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 48
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 152 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKAS 30
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7)
Length = 239
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 313 WTSGTAPNLARIRRG-SPLTSGCRQPLVPSH 224
W SGT R RR SPL S CR+P P+H
Sbjct: 148 WQSGTESTERRKRRFVSPLRSSCRRPRGPTH 178
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/63 (36%), Positives = 26/63 (41%)
Frame = -2
Query: 287 GQDPARVSIDKWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYL 108
GQ ARVS + P T K LT P L S PQ Y AT A RG++
Sbjct: 409 GQIRARVSGNALWPATCSQKRRLTAIYNMPYTVLFSLNPLPQPYPLPAIPSATKALRGHV 468
Query: 107 TPQ 99
Q
Sbjct: 469 VRQ 471
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +2
Query: 404 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIF 502
CC C V C S V Y RV C VCY V+F
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVF 206
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 284 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 415
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 44 GISSRSERTCGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 184
G + E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
Length = 832
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 197 WVLWSYLSTMTWYQRLSATTC 259
WV+ SYL+ TWYQ T C
Sbjct: 65 WVITSYLTNCTWYQWTYRTDC 85
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -2
Query: 557 LYHITAYNKLITHS*VPH*I*PAL---YNTQTHTHFV--TRAHHKNTHSHM*RTHNTSTQ 393
L H+T ITHS + H L Y+T TH+ T H THS + TH+T T
Sbjct: 62 LTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTL--THSTITH 119
Query: 392 FLIFHTTV 369
+ H+ +
Sbjct: 120 STLTHSNL 127
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 480 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 370
HT ++S +TR + H TH TH +T +N SH R
Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.1 bits (62), Expect = 4.3
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Frame = -2
Query: 473 THTHFVTR--AHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYMVIGIQNG-YPYVVMD-- 309
THTH TR H +TH+H H+T + H T D ++ +N +P+
Sbjct: 483 THTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHDTHLHDTTENDTHPHDTTGND 542
Query: 308 --IGDSSEPGQDP-ARVSIDKWLPTTAGTKS---SLTGNSTEPRD 192
+ D++E P D L T G K+ TGN T D
Sbjct: 543 TYLHDTTENDTHPHDTTGNDTQLHDTTGNKTRPHDTTGNDTHLHD 587
>SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)
Length = 730
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 204 CGVTCQR*LGTSGCRQPLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVV 359
C C R G GC P+V D + + PD HHY R H VV
Sbjct: 281 CDGLC-RSCGVVGCSLPVVGPDDQVQPWDWRDCPDYHHYFRSQTCWEAHRVV 331
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 432 CVFMMCACYEVSVSLCVI*CRLY---LVRYS*VRYKFIVCCNMVQIIVMLLIV 581
C F CA VS CV+ CR+ +V V + + CC + ++V+ +V
Sbjct: 250 CAFFSCAVLYRVVSCCVVSCRVLSCCIVSCRVVSCRVLSCCIVSCLVVLYRVV 302
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 204 CGVTCQR*LGTSGCRQPLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVV 359
C C R G GC P+V D + + PD HHY R H VV
Sbjct: 519 CDGLC-RSCGVVGCSLPVVGPDDQVQPWDWRDCPDYHHYFRSQTCWEAHRVV 569
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -1
Query: 507 ALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTIS 388
AL+ T T+ HT+SHSL + TS TL H THS H + +S
Sbjct: 388 ALSFTCTLIHTHSHSLALSFTS---TLIH-THS-HSHALS 422
>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
Length = 1604
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 713 STSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTKSVCLKIIIFLHY 576
+TS V A +T E+D +L+ G ++R+T+ C+ I + + +
Sbjct: 1531 TTSDSVRASHKTSEEDTALLFYGFRHSVVVRKTRVGCVVIEVIVMF 1576
>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 15 RCFEDRRLEKVYQAVRSVRAEEEKHLIRL--RRQITSA-SHRGISTAIE 152
+ EDRR+ K + R +A E++H+ + R +T A R IS A+E
Sbjct: 76 KALEDRRITKELEGRRVTKALEDRHVTKALEDRHVTKALEDRRISKALE 124
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 488 LYNTQTHTHFVTRAHHKNTH 429
+YN + HT + AHH NTH
Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,204,783
Number of Sequences: 59808
Number of extensions: 676374
Number of successful extensions: 1993
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1968
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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